Dirk H.J Poot

Dr. Dirk H.J Poot

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 June 2023 in Magnetic Resonance in Medicine
Verified
Journal Article
Open access
BSBanafshe Shafieizargar
Banafshe Shafieizargar
RBRiwaj Byanju
Riwaj Byanju
Jan SijbersJan Sijbers
Jan Sijbers
SKStefan Klein
Stefan Klein
ADArnold J. Den Dekker
Arnold J. Den Dekker
DPDirk H.J Poot
Dirk H.J Poot
Purpose: To systematically review the techniques that address undersampling artifacts in accelerated quantitative magnetic resonance imaging (qMRI).Methods: A literature search was conducted using the Embase, Medline, Web of Science Core Collection, Coherence Central Register of Controlled Trials, and Google Scholar databases for studies, published before July 2022 proposing reconstruction techniques for accelerated qMRI. Studies are reviewed according to inclusion criteria, and included studies are categorized based on the methodology used.Results: A total of 292 studies included in the review are categorized. A technical overview of each category is provided, and the categories are described in a unified mathematical framework. The distribution of the reviewed studies over time, application domain, and parameters of interest is illustrated.Conclusion: An increasing trend in the number of articles that propose new techniques for accelerated qMRI reconstruction indicates the importance of acceleration in qMRI. The techniques are mostly validated for relaxometry parameters and brain scans. The categories of techniques are compared based on theoretical grounds, highlighting existing trends and potential gaps in the field.

16 October 2024 in Magnetic Resonance in Medicine
Verified
Journal Article
Open access
MFMiha Fuderer
Miha Fuderer
BWBarbara Wichtmann
Barbara Wichtmann
FCFabio Crameri
Fabio Crameri
NSNandita M. de Souza
Nandita M. de Souza
BBBettina Baeßler
Bettina Baeßler
XGXavier Golay
Xavier Golay
Purpose: To harmonize the use of color for MR relaxometry maps and therefore recommend the use of specific color‐maps for representing , , and maps and their inverses.Methods: Perceptually linearized color‐maps were chosen to have similar color settings as those proposed by Griswold et al. in 2018. A Delphi process, polling the opinion of a panel of 81 experts, was used to generate consensus on the suitability of these maps.Results: Consensus was reached on the suitability of the logarithm‐processed Lipari color‐map for and the logarithm‐processed Navia color‐map for and . There was consensus on color bars being mandatory and on the use of a specific value indicating “invalidity.” There was no consensus on whether the ranges should be fixed per anatomy.Conclusion: The authors recommend the use of the logarithm‐processed Lipari color‐map for displaying quantitative maps and maps; likewise, the authors recommend the logarithm‐processed Navia color‐map for displaying , , , and maps.This work originated with the Quantitative MR Study Group of the International Society of Magnetic Resonance in Medicine (ISMRM); it has the approval of the Publication Committee and of the Board of the ISMRM.

17 December 2022 in Scientific Reports
Verified
Journal Article
Open access
PDF file
LNLaura Nuñez-Gonzalez
Laura Nuñez-Gonzalez
KGKarin A. van Garderen
Karin A. van Garderen
MSMarion Smits
Marion Smits
JJJaap Jaspers
Jaap Jaspers
ARAlejandra Méndez Romero
Alejandra Méndez Romero
JHJuan Hernandez-Tamames
Juan Hernandez-Tamames
Quantitative MR imaging is becoming more feasible to be used in clinical work since new approaches have been proposed in order to substantially accelerate the acquisition and due to the possibility of synthetically deriving weighted images from the parametric maps. However, their applicability has to be thoroughly validated in order to be included in clinical practice. In this pilot study, we acquired Magnetic Resonance Image Compilation scans to obtain T1, T2 and PD maps in 14 glioma patients. Abnormal tissue was segmented based on conventional images and using a deep learning segmentation technique to define regions of interest (ROIs). The quantitative T1, T2 and PD values inside ROIs were analyzed using the mean, the standard deviation, the skewness and the kurtosis and compared to the quantitative T1, T2 and PD values found in normal white matter. We found significant differences in pre-contrast T1 and T2 values between abnormal tissue and healthy tissue, as well as between T1w-enhancing and non-enhancing regions. ROC analysis was used to evaluate the potential of quantitative T1 and T2 values for voxel-wise classification of abnormal/normal tissue (AUC = 0.95) and of T1w enhancement/non-enhancement (AUC = 0.85). A cross-validated ROC analysis found high sensitivity (73%) and specificity (73%) with AUCs up to 0.68 on the a priori distinction between abnormal tissue with and without T1w-enhancement. These results suggest that normal tissue, abnormal tissue, and tissue with T1w-enhancement are distinguishable by their pre-contrast quantitative values but further investigation is needed.

1 April 2020 in Seminars in Arthritis and Rheumatism
Verified
Journal Article
Closed access
BVBas A. de Vries
Bas A. de Vries
RHRianne A. van der Heijden
Rianne A. van der Heijden
JVJoost Verschueren
Joost Verschueren
PBPieter K. Bos
Pieter K. Bos
DPDirk H.J Poot
Dirk H.J Poot
EOEdwin H.G. Oei
Edwin H.G. Oei

31 August 2020 in Magnetic Resonance in Medicine
Verified
Journal Article
Open access
PDF file
NSNienke D. Sijtsema
Nienke D. Sijtsema
SPSteven F. Petit
Steven F. Petit
DPDirk H.J Poot
Dirk H.J Poot
GVGerda M. Verduijn
Gerda M. Verduijn
ALAad van der Lugt
Aad van der Lugt
JHJuan A. Hernandez‐Tamames
Juan A. Hernandez‐Tamames
Purpose: To optimize the diffusion‐weighting b values and postprocessing pipeline for hybrid intravoxel incoherent motion diffusion kurtosis imaging in the head and neck region.Methods: Optimized diffusion‐weighting b value sets ranging between 5 and 30 b values were constructed by optimizing the Cramér‐Rao lower bound of the hybrid intravoxel incoherent motion diffusion kurtosis imaging model. With this model, the perfusion fraction, pseudodiffusion coefficient, diffusion coefficient, and kurtosis were estimated. Sixteen volunteers were scanned with a reference b value set and 3 repeats of the optimized sets, of which 1 with volunteers swallowing on purpose.The effects of (1) b value optimization and number of b values, (2) registration type (none vs. intervolume vs. intra‐ and intervolume registration), and (3) manual swallowing artifact rejection on the parameter precision were assessed.Results: The SD was higher in the reference set for perfusion fraction, diffusion coefficient, and kurtosis by a factor of 1.7, 1.5, and 2.3 compared to the optimized set, respectively. A smaller SD (factor 0.7) was seen in pseudodiffusion coefficient. The sets containing 15, 20, and 30 b values had comparable repeatability in all parameters, except pseudodiffusion coefficient, for which set size 30 was worse. Equal repeatability for the registration approaches was seen in all parameters of interest. Swallowing artifact rejection removed the bias when present.Conclusion: To achieve optimal hybrid intravoxel incoherent motion diffusion kurtosis imaging in the head and neck region, b value optimization and swallowing artifact image rejection are beneficial. The optimized set of 15 b values yielded the optimal protocol efficiency, with a precision comparable to larger b value sets and a 50% reduction in scan time.

21 November 2019 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
WVWillem van Valenberg
Willem van Valenberg
SKStefan Klein
Stefan Klein
FVFrans M. Vos
Frans M. Vos
KKKirsten Koolstra
Kirsten Koolstra
LVLucas J. van Vliet
Lucas J. van Vliet
DPDirk H.J Poot
Dirk H.J Poot
Quantitative MRI methods that estimate multiple physical parameters simultaneously often require the fitting of a computational complex signal model defined through the Bloch equations. Repeated Bloch simulations can be avoided by matching the measured signal with a precomputed signal dictionary on a discrete parameter grid (i.e. lookup table) as used in MR Fingerprinting. However, accurate estimation requires discretizing each parameter with a high resolution and consequently high computational and memory costs for dictionary generation, storage, and matching. Here, we reduce the required parameter resolution by approximating the signal between grid points through B-spline interpolation. The interpolant and its gradient are evaluated efficiently which enables a least-squares fitting method for parameter mapping. The resolution of each parameter was minimized while obtaining a user-specified interpolation accuracy. The method was evaluated by phantom and in-vivo experiments using fully-sampled and undersampled unbalanced (FISP) MR fingerprinting acquisitions. Bloch simulations incorporated relaxation effects (T1,T2), proton density (PD), receiver phase (φ0), transmit field inhomogeneity (B1+), and slice profile. Parameter maps were compared with those obtained from dictionary matching, where the parameter resolution was.