Geometallurgy integrates aspects of geology, metallurgy, and mine planning in order to improve decision making in mining schedules. A geometallurgical model is a 3D space that is typically synthesized from early-stage small-scale samples and is composed of several metallurgical units, or domains. This work explores the synthesis of a geometallurgical model for a copper deposit using a purely data-driven unsupervised approach. To this end, a dataset of 1112 drill samples is used, which are clustered using different methods, namely, k-means, hierarchical clustering (AGG), self-organizing maps (SOM), and DBSCAN. Two cluster validity indices (Silhouette and Calinski–Harabasz) are used to select the final model. To validate the potential of the proposed approach, a simulated economic evaluation is conducted. Results demonstrate that k-means exhibits a better performance in terms of modeling and that using the obtained geometallurgical model for mining scheduling increases the project’s Net Present Value (NPV) by as much as 4%. Based on these results, the proposed methodology is an appealing alternative for generating geometallurgical models within greenfield, brownfield and ongoing operations.