James Shine

Dr. James Shine


Research Focus & Metrics

Academic Career Length

26Years (2001-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2016 in Neuron
Verified
Journal Article
Closed access
JSJames Shine
James Shine
PBPatrick G. Bissett
Patrick G. Bissett
PBPeter T. Bell
Peter T. Bell
OKOluwasanmi Koyejo
Oluwasanmi Koyejo
JBJoshua H. Balsters
Joshua H. Balsters
RPRussell A. Poldrack
Russell A. Poldrack

27 October 2022 in Nature Neuroscience
Verified
Journal Article
Open access
PDF file
JHJustine Y. Hansen
Justine Y. Hansen
GSGolia Shafiei
Golia Shafiei
RMRoss D. Markello
Ross D. Markello
KSKelly Smart
Kelly Smart
SCSylvia M. L. Cox
Sylvia M. L. Cox
BMBratislav Misic
Bratislav Misic
Neurotransmitter receptors support the propagation of signals in the human brain. How receptor systems are situated within macro-scale neuroanatomy and how they shape emergent function remain poorly understood, and there exists no comprehensive atlas of receptors. Here we collate positron emission tomography data from more than 1,200 healthy individuals to construct a whole-brain three-dimensional normative atlas of 19 receptors and transporters across nine different neurotransmitter systems. We found that receptor profiles align with structural connectivity and mediate function, including neurophysiological oscillatory dynamics and resting-state hemodynamic functional connectivity. Using the Neurosynth cognitive atlas, we uncovered a topographic gradient of overlapping receptor distributions that separates extrinsic and intrinsic psychological processes. Finally, we found both expected and novel associations between receptor distributions and cortical abnormality patterns across 13 disorders. We replicated all findings in an independently collected autoradiography dataset. This work demonstrates how chemoarchitecture shapes brain structure and function, providing a new direction for studying multi-scale brain organization.

1 January 2020 in Network Neuroscience
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Journal Article
Open access
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DLDaniel J. Lurie
Daniel J. Lurie
DKDaniel Kessler
Daniel Kessler
DBDani S Bassett
Dani S Bassett
RBRichard F. Betzel
Richard F. Betzel
MBMichael Breakspear
Michael Breakspear
VCVince Calhoun
Vince Calhoun
The brain is a complex, multiscale dynamical system composed of many interacting regions. Knowledge of the spatiotemporal organization of these interactions is critical for establishing a solid understanding of the brain’s functional architecture and the relationship between neural dynamics and cognition in health and disease. The possibility of studying these dynamics through careful analysis of neuroimaging data has catalyzed substantial interest in methods that estimate time-resolved fluctuations in functional connectivity (often referred to as “dynamic” or time-varying functional connectivity; TVFC). At the same time, debates have emerged regarding the application of TVFC analyses to resting fMRI data, and about the statistical validity, physiological origins, and cognitive and behavioral relevance of resting TVFC. These and other unresolved issues complicate interpretation of resting TVFC findings and limit the insights that can be gained from this promising new research area. This article brings together scientists with a variety of perspectives on resting TVFC to review the current literature in light of these issues. We introduce core concepts, define key terms, summarize controversies and open questions, and present a forward-looking perspective on how resting TVFC analyses can be rigorously and productively applied to investigate a wide range of questions in cognitive and systems neuroscience.

21 January 2019 in Nature Neuroscience
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Journal Article
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JSJames Shine
James Shine
MBMichael Breakspear
Michael Breakspear
PBPeter T. Bell
Peter T. Bell
KMKaylena A. Ehgoetz Martens
Kaylena A. Ehgoetz Martens
RSRichard Shine
Richard Shine
RPRussell A. Poldrack
Russell A. Poldrack

9 December 2015 in Nature Communications
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Journal Article
Open access
PDF file
RPRussell A. Poldrack
Russell A. Poldrack
TLTimothy O. Laumann
Timothy O. Laumann
OKOluwasanmi Koyejo
Oluwasanmi Koyejo
BGBrenda Gregory
Brenda Gregory
AHAshleigh Hover
Ashleigh Hover
JMJeanette A. Mumford
Jeanette A. Mumford
Psychiatric disorders are characterized by major fluctuations in psychological function over the course of weeks and months, but the dynamic characteristics of brain function over this timescale in healthy individuals are unknown. Here, as a proof of concept to address this question, we present the MyConnectome project. An intensive phenome-wide assessment of a single human was performed over a period of 18 months, including functional and structural brain connectivity using magnetic resonance imaging, psychological function and physical health, gene expression and metabolomics. A reproducible analysis workflow is provided, along with open access to the data and an online browser for results. We demonstrate dynamic changes in brain connectivity over the timescales of days to months, and relations between brain connectivity, gene expression and metabolites. This resource can serve as a testbed to study the joint dynamics of human brain and metabolic function over time, an approach that is critical for the development of precision medicine strategies for brain disorders.

1 July 2019 in Trends in Cognitive Sciences
Verified
Journal Article
Closed access
JSJames Shine
James Shine