Daiver Estiven Jiménez Gutiérrez

Mr. Daiver Estiven Jiménez Gutiérrez

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 May 2023 in Molecules
Verified
Journal Article
Open access
PDF file
MVMario S. Valdés-Tresanco
Mario S. Valdés-Tresanco
MVMario S. Valdés-Tresanco
Mario S. Valdés-Tresanco
DGDaiver Estiven Jiménez Gutiérrez
Daiver Estiven Jiménez Gutiérrez
EMErnesto Moreno
Ernesto Moreno
The number of applications for nanobodies is steadily expanding, positioning these molecules as fast-growing biologic products in the biotechnology market. Several of their applications require protein engineering, which in turn would greatly benefit from having a reliable structural model of the nanobody of interest. However, as with antibodies, the structural modeling of nanobodies is still a challenge. With the rise of artificial intelligence (AI), several methods have been developed in recent years that attempt to solve the problem of protein modeling. In this study, we have compared the performance in nanobody modeling of several state-of-the-art AI-based programs, either designed for general protein modeling, such as AlphaFold2, OmegaFold, ESMFold, and Yang-Server, or specifically designed for antibody modeling, such as IgFold, and Nanonet. While all these programs performed rather well in constructing the nanobody framework and CDRs 1 and 2, modeling CDR3 still represents a big challenge. Interestingly, tailoring an AI method for antibody modeling does not necessarily translate into better results for nanobodies.

9 August 2022 in Pharmaceutics
Verified
Journal Article
Open access
PDF file
SAShaydier Argel-Pérez
Shaydier Argel-Pérez
MCMelissa Castaño
Melissa Castaño
DGDaiver Estiven Jiménez Gutiérrez
Daiver Estiven Jiménez Gutiérrez
SRSebastian Rodríguez
Sebastian Rodríguez
MVMaria Jose Vallejo
Maria Jose Vallejo
Marlon Andres OsorioMarlon Andres Osorio
Marlon Andres Osorio
Bacterial nanocellulose (BNC) is a novel nanomaterial known for its large surface area, biocompatibility, and non-toxicity. BNC contributes to regenerative processes in the skin but lacks antimicrobial and anti-inflammatory properties. Herein, the development of bioactive wound dressings by loading antibacterial povidone-iodine (PVI) or anti-inflammatory acetylsalicylic acid (ASA) into bacterial cellulose is presented. BNC is produced using Hestrin–Schramm culture media and loaded via immersion in PVI and ASA. Through scanning electron microscopy, BNC reveals open porosity where the bioactive compounds are loaded; the mechanical tests show that the dressing prevents mechanical wear. The loading kinetic and release assays (using the Franz cell method) under simulated fluids present a maximum loading of 589.36 mg PVI/g BNC and 38.61 mg ASA/g BNC, and both systems present a slow release profile at 24 h. Through histology, the complete diffusion of the bioactive compounds is observed across the layers of porcine skin. Finally, in the antimicrobial experiment, BNC/PVI produced an inhibition halo for Gram-positive and Gram-negative bacteria, confirming the antibacterial activity. Meanwhile, the protein denaturation test shows effective anti-inflammatory activity in BNC/ASA dressings. Accordingly, BNC is a suitable platform for the development of bioactive wound dressings, particularly those with antibacterial and anti-inflammatory properties.

11 April 2023 in Preprints.org
Verified
Preprint
Open access
PDF file
MVMario S. Valdés-Tresanco
Mario S. Valdés-Tresanco
MVMario S. Valdés-Tresanco
Mario S. Valdés-Tresanco
DGDaiver Estiven Jiménez Gutiérrez
Daiver Estiven Jiménez Gutiérrez
EMErnesto Moreno
Ernesto Moreno
The number of applications for nanobodies is steadily expanding, positioning these molecules as fast-growing biologic products in the biotechnology market. Several of their applications require protein engineering, which in turn would greatly benefit from having a reliable structural model of the nanobody of interest. However, as with antibodies, structural modeling of nanobodies is still a challenge. With the rise of artificial intelligence (AI), several methods have been developed in recent years that attempt to solve the problem of protein modeling. In this study, we have compared the performance in nanobody modeling of several state-of-the-art AI-based programs, either designed for general protein modeling, such as AlphaFold2, OmegaFold, ESMFold and Yang-Server, or specifically designed for antibody modeling, such as IgFold, and Nanonet. While all these programs performed rather well in constructing the nanobody framework and CDRs 1 and 2, modeling of CDR3 sill represents a big challenge. Interestingly, tailoring an AI method for antibody modeling does not necessarily translate into better results for nanobodies.

8 October 2020
Verified
Book Chapter
Closed access
PDF file
SAShaydier Argel-Pérez
Shaydier Argel-Pérez
DGDaiver Estiven Jiménez Gutiérrez
Daiver Estiven Jiménez Gutiérrez
ARAlexander León Ramírez
Alexander León Ramírez
SASamuel Villa Alvarez
Samuel Villa Alvarez
Marlon Andres OsorioMarlon Andres Osorio
Marlon Andres Osorio
GSGustavo Suarez
Gustavo Suarez

1 December 2019 in Journal of Physics: Conference Series
Verified
Conference Paper
Open access
MRM Castaño Ramirez
M Castaño Ramirez
DGDaiver Estiven Jiménez Gutiérrez
Daiver Estiven Jiménez Gutiérrez
JVJ C Palacio Valderrama
J C Palacio Valderrama
In Colombia, an average of 75 tons of mercury is released annually due to the illegal mining activity of gold, causing natural water sources to be contaminated in regions that collect water through rivers and streams, generating mercury poisoning. Nanochitosan, a biopolymer synthesized at the nanoscale, has shown its ability to retain different heavy metals in wastewater due to its greater availability of amino groups at its surface. In this work, a set of preliminary parameters were identified and established for the development of cellulose acetate membranes with chitosan nanoparticles for mercury retention. Nanoparticles were synthesized by ionic gelation, varying the addition rate of sodium tripolyphosphate. The membranes were prepared by solvent exchange, varying the concentration of polyethylene glycol, the pore-forming agent. Finally, the samples were characterized by scanning electron microscopy and dynamic light scattering. The results showed that there is a proportional relationship between the rate of addition and the size of the particles obtained, while, for the membranes, 11% polyethylene glycol produced a porous network with cellulose acetate fibers inside the pores.