Abdulkerim Karaynir

Mr. Abdulkerim Karaynir

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 January 2023 in Virus Research
Verified
Journal Article
Open access
SASahd Ali
Sahd Ali
AKAbdulkerim Karaynir
Abdulkerim Karaynir
HSHanife Salih
Hanife Salih
SÖSerkan Öncü
Serkan Öncü
BBBülent Bozdoğan
Bülent Bozdoğan
• Phage therapy is a promising alternative treatment for antibiotic-resistant Proteus infections. • The genome sequence and biological characterization show that both RP6 and RP7 phages are highly lytic. • The isolated phages significantly reduced Proteus sp. (planktonic and mature biofilm forms) in vitro. • Both phages do not contain any virulence and lysogenic genes and are physically stable. • The characterization results showed that both RP6 and RP7 phages are suitable for phage therapy.

30 May 2022 in Archives of Microbiology
Verified
Journal Article
Closed access
PDF file
HSHanife Salih
Hanife Salih
AKAbdulkerim Karaynir
Abdulkerim Karaynir
MYMelis Yalcin
Melis Yalcin
EOErman Oryasin
Erman Oryasin
CHCan Holyavkin
Can Holyavkin
BBBulent Bozdogan
Bulent Bozdogan

13 October 2023 in PLOS ONE
Verified
Journal Article
Open access
PDF file
AKAbdulkerim Karaynir
Abdulkerim Karaynir
BBBülent Bozdoğan
Bülent Bozdoğan
HSHanife Salih
Hanife Salih
The achievement of an active biological entity from environmental DNA is important in the field of phage. In this study, the environmental DNA extracted from hospital wastewater was transferred into Escherichia coli DH10B and Escherichia coli BL21 with chemical transformation and electroporation. After transformation, overnight cultures were filtered and used as phage source. The efficacies of the techniques were evaluated with spot test and double-layer agar assay. The emerged phage, named as ADUt, was purified and host-range analysis was performed. Phage DNA was isolated, sequenced and restriction profile was determined. The genome was assembled. The phylogenetic tree was constructed via VipTree. The extracted DNA resulted in active phage by the transformation of E. coli DH10B, but not E. coli BL21. The chemical transformation was found more successful than electroporation. ADUt phage was found to be polyvalent and effective against limited strains of Shigella and Escherichia genera. The phage genome size and GC ratio are 166904 bp and 35.67%, respectively. ADUt is a member of Straboviridae family and Tequatrovirus genus. This is the first study that uses environmental DNA for acquiring active phage, which may be an important source of new phage discovery. The result showed that DNA transformation yields active bacteriophage with both chemical transformation and electroporation.

18 January 2024 in Virus Genes
Verified
Journal Article
Closed access
PDF file
HSHanife Salih
Hanife Salih
AKAbdulkerim Karaynir
Abdulkerim Karaynir
ÜYÜlkü İrEm Yilmaz
Ülkü İrEm Yilmaz
BBBilgin Bahadır Başgöz
Bilgin Bahadır Başgöz
THTugrul Hosbul
Tugrul Hosbul
BBBülent Bozdoğan
Bülent Bozdoğan

23 September 2025 in European Journal of Clinical Microbiology & Infectious Diseases
Verified
Journal Article
Closed access
PDF file
EAElif Aydin
Elif Aydin
ASA. Kocak Sezgin
A. Kocak Sezgin
MGMeliha Gündüz
Meliha Gündüz
GKGüllü Kaymak
Güllü Kaymak
BAB. Açikgoz
B. Açikgoz
BBB. Bozdoğan
B. Bozdoğan

19 November 2025 in International Microbiology
Verified
Journal Article
Closed access
PDF file
EAElif Aydin
Elif Aydin
AKAbdulkerim Karaynir
Abdulkerim Karaynir
RORg. Ozkan
Rg. Ozkan
BBB. Bozdogan
B. Bozdogan