Soil salinization has been a tremendous obstacle for agriculture production. The regulatory networks underlying salinity adaption in model plants have been extensively explored. However, limited understanding of the salt response mechanisms has hindered the planting and production in Fagopyrum tataricum, an economic and health-beneficial plant mainly distributing in southwest China. In this study, we performed physiological analysis and found that salt stress of 200 mM NaCl solution significantly affected the relative water content (RWC), electrolyte leakage (EL), malondialdehyde (MDA) content, peroxidase (POD) and superoxide dismutase (SOD) activities in tartary buckwheat seedlings. Further, we conducted transcriptome comparison between control and salt treatment to identify potential regulatory components involved in F. tataricum salt responses. A total of 53.15 million clean reads from control and salt-treated libraries were produced via an Illumina sequencing approach. Then we de novo assembled these reads into a transcriptome dataset containing 57,921 unigenes with N50 length of 1400 bp and total length of 44.5 Mb. A total of 36,688 unigenes could find matches in public databases. GO, KEGG and KOG classification suggested the enrichment of these unigenes in 56 sub-categories, 25 KOG, and 273 pathways, respectively. Comparison of the transcriptome expression patterns between control and salt treatment unveiled 455 differentially expressed genes (DEGs). Further, we found the genes encoding for protein kinases, phosphatases, heat shock proteins (HSPs), ATP-binding cassette (ABC) transporters, glutathione S-transferases (GSTs), abiotic-related transcription factors and circadian clock might be relevant to the salinity adaption of this species. Thus, this study offers an insight into salt tolerance mechanisms, and will serve as useful genetic information for tolerant elite breeding programs in future.

Photosynthesis is the basis for plant productivity, and improvement of photosynthetic efficiency is an important way to improve crop yield. However, the relationship between photosynthetic parameters and the yield of Tartary buckwheat (Fagopyrum tataricum) under rainfed conditions is unclear. A two-year field trial was conducted during 2016 and 2017 to assess the photosynthetic capacity of different leaves, dry matter accumulation, and yield of four Tartary buckwheat cultivars from flowering to maturity. The leaves of all cultivars aged gradually after flowering, and the leaf chlorophyll (Chl) and soluble protein (SP) contents, net photosynthetic rates (P_n), transpiration rates (T_r), and stomatal conductance (G_s) tended to decline. The Chl, SP, P_n, T_r, and G_s of cultivars (cvs.) XiQiao2 and QianKu3 were significantly higher than those of LiuKu3 and JiuJiang at each sampling time from 18 days after anthesis to maturity, but the intercellular CO₂ content (C_i) showed the opposite trend. Cultivars XiQiao2 and QianKu3 produced more total dry matter (mean 17.1% higher), had higher harvest index (HI, mean 16.4% higher), and yield (mean 29.0% higher) than cvs. LiuKu3 and JiuJiang at maturity, and the difference was remarkably consistent. The yield of all the cultivars was positively correlated with leaf Chl, SP, P_n, T_r, and G_s, but negatively correlated with C_i. At late growth stages, the high-yielding cultivars maintained higher Chl, SP contents, P_n, T_r, and G_s, and showed higher dry matter accumulation and lower C_i than the low-yielding cultivars, consistent with their higher leaf photosynthetic capacity. The important factors determining the yield of Tartary buckwheat were maintaining higher leaf Chl and SP content and photosynthetic capacity and delaying aging during the grain formation stage. Enhanced rates of photosynthesis and dry matter accumulation led to higher post-anthesis accumulation of biomass with a positive impact on grain number and higher yield.

Inflorescence architecture is denoted by the spatial arrangement of various lateral branches and florets formed on them, which is shaped by a complex of regulators. Unveiling of the regulatory mechanisms underlying inflorescence architecture is pivotal for improving crop yield potential. Quinoa (Chenopodium quinoa Willd), a pseudo cereal originated from Andean region of South America, has been widely recognized as a functional super food due to its excellent nutritional elements. Increasing worldwide consumption of this crop urgently calls for its yield improvement. However, dissection of the regulatory networks underlying quinoa inflorescence patterning is lacking. In this study, we performed RNA-seq analysis on quinoa inflorescence samples collected from six developmental stages, yielding a total of 138.8 GB data. We screened 21,610 differentially expressed genes (DEGs) among all the stages through comparative analysis. Weighted Gene Co-Expression Network Analysis (WGCNA) was performed to categorize the DEGs into ten different modules. Subsequently, we placed emphasis on investigating the modules associated with none branched and branched inflorescence samples. We manually refined the coexpression networks with stringent edge weight cutoffs, and generated core networks using transcription factors and key inflorescence architecture related genes as seed nodes. The core networks were visualized and analyzed by Cytoscape to obtain hub genes in each network. Our finding indicates that the specific occurrence of B3, TALE, WOX, LSH, LFY, GRAS, bHLH, EIL, DOF, G2-like and YABBY family members in early reproductive stage modules, and of TFL, ERF, bZIP, HD-ZIP, C2H2, LBD, NAC, C3H, Nin-like and FAR1 family members in late reproductive stage modules, as well as the several different MADS subfamily members identified in both stages may account for shaping quinoa inflorescence architecture. In this study we carried out comparative transcriptome analysis of six different stages quinoa inflorescences, and using WGCNA we obtained the most highly potential central hubs for shaping inflorescence. The data obtained from this study will enhance our understanding of the gene network regulating quinoa inflorescence architecture, as well will supply with valuable genetic resources for high-yield elite breeding in the future.