The removal of the net enclosure has been used as a lake management strategy in various regions of China as ecological development is given more attention. Nevertheless, little is known about the substantive impact of this measure on fish communities in inland lakes. To this end, the fish community composition and structural features after the removal of the net enclosure in Gehu Lake were explored and evaluated in this study from 2021 to 2022 and compared to the investigation before the net enclosure removal from 2017 to 2018. Belonging to 7 orders, 10 families, and 46 species, a total of 17,151 fish were collected, with pelagic, sedentary, and omnivorous species dominating. In comparison, the number of species increased by 10 after removal, and fish alpha diversity increased. The Index of Relative Importance (IRI) revealed that the composition of dominating species remained constant, including Coilia nasus, Hypophthalmichthys molitrix, and Hypophthalmichthys nobilis; Parabramis pekinensis, Megalobrama amblycephal, and Culter mongolicus were upgraded from common species to general species. Culter alburnus, Hemiculter bleekeri, and Pseudobrama simoni were downgraded from general species to common species. Elopichthys bambusa had become a common species (IRI = 109.35), which was not discovered before removal. According to the hierarchical clustering (HC) and non-metric multidimensional sequencing (NMDS), the fish community of the northern reserve was highly aggregated. As the Abundance Biomass Comparison (ABC) curve and biodiversity index indicated, the fish community structure of the whole lake was in a state of moderate anthropogenic disturbance with reduced stability, while that of the northern reserve was in a state of light anthropogenic disturbance with greater stability. The number of fish species increased in this survey compared to the period before removal, species and dominant species composition altered dramatically, and total lake stability declined. This study demonstrates that the fish diversity in Gehu Lake increased after the removal of the net enclosure. Meanwhile, the stability of the fish community structure was decreased temporarily. Lake restoration is a long-term process, and the underlying impact of the removal of the net enclosure still requires continuous monitoring and further studies.

To explore the effects of different plant combinations in ecological floating beds on water quality purification and phytoplankton community structure in shallow eutrophic lakes, we conducted a survey of phytoplankton communities within ecological floating beds featuring distinct plant combinations in Meiliang Bay, Lake Taihu, during June and August 2021. The study focuses on two combinations: EA (Canna indica + Acorus calamus + Phragmites australis) and ES (Canna indica + Oenanthe javanica + Sagittaria sagittifolia). Results indicated that ecological floating beds significantly improved water quality, with the strongest restoration effects observed in the EA area. Specifically, turbidity was reduced by 47–89%, while chlorophyll a (Chl-a) concentration inhibition rates reached 82% in June and 54% in August. The comprehensive trophic state index (TLI) remained stable at levels indicating slight eutrophication (≤58.6). Phytoplankton community structure shifted from dominance by eutrophic functional groups (primarily FG M) toward greater diversity. In the EA area, the number of dominant functional groups increased from five (control) to six, and the abundance of the key cyanobacteria group (FG M) declined from 18.29% (control) to 7.86%. Redundancy analysis (RDA) revealed temporal changes in driving factors: nutrients were primary in June (explanation rate: 64.7%), while physical factors dominated in August (explanation rate: 51.2%). This study demonstrates that installing ecological floating beds with diverse plant combinations in shallow eutrophic lakes can effectively alter phytoplankton community structure and enhance in situ water restoration. Among the tested combinations, EA (Canna indica + Acorus calamus + Phragmites australis) exhibited the optimal restoration effect. These findings provide a scientific basis for water environment protection and aquatic biological resource restoration in shallow eutrophic lakes.

The Chinese mitten crab (Eriocheir sinensis) is widely distributed along eastern China, where northern and southern populations may have evolved different environmental adaptation mechanisms. DNA methylation, as an important epigenetic modification, plays a key regulatory role in environmental adaptation. In this study, muscle and hepatopancreas tissues from E. sinensis populations of the Liaohe River (LH) and Beilunhe River (BLH) were subjected to integrated RNA-seq and whole-genome bisulfite sequencing (WGBS) analyses, generating 12 mRNA libraries and 12 DNA methylation libraries. RNA-seq analysis identified 622 and 783 differentially expressed genes (DEGs) in muscle and the hepatopancreas, respectively, in the LH group compared with the BLH group, with downregulated genes accounting for a larger proportion. WGBS analysis showed that genome-wide DNA methylation in E. sinensis was predominantly in the CG context, with the highest methylation levels observed in gene body regions. A total of 972 and 991 differentially methylated regions (DMRs) were identified in muscle and the hepatopancreas, respectively. Integrated analysis further identified 10 differentially methylated and expressed genes (DMEGs) in muscle and 26 DMEGs in the hepatopancreas. Notably, no single fixed pattern was observed between methylation changes and gene expression changes in either tissue. These findings suggest that DNA methylation may participate in environmental adaptation in northern and southern populations of E. sinensis by modulating gene expression. Our results highlight the important role of epigenetic regulation in the evolutionary adaptation of crustaceans to different environments and provide a theoretical basis for the development of environment-associated molecular markers and the evaluation of adaptive germplasm resources.