With the decrease in fish diversity, the monitoring of fish has become a current research hotspot. Here, the fish diversity and spatial distribution along a salinity gradient (0.28‰–3.32‰) in Xinglinwan Reservoir, China, were investigated using eDNA and the TSM. With the combination of both methods, 12 species from 6 orders, 9 families, and 11 genera were observed. The invasive species Oreochromis niloticus had the highest relative abundance, accounting for 56.91% in the TSM and 89.80% in eDNA, respectively. eDNA detected 83.33% of the species detected using the TSM, and an additional six species (50.0% of the total species) were detected via only eDNA. Moreover, eDNA supplemented the unavailable abundance data from the TSM. The TSM revealed that the diversity and relative abundance of fish inhabiting seawater and brackish water increased with an increase in salinity, but this was not found using eDNA. Thus, our study highlights that Xinglinwan Reservoir has a low species richness and is suffering from the great harm of ecological invasion. Our findings also show that eDNA could be reliable for providing a comprehensive picture of fish, but discriminating the spatial heterogeneity of fish communities is a challenge for its widespread adoption in lentic brackish systems.

Seasonal water-level fluctuations can profoundly impact nutrient dynamics in aquatic ecosystems, influencing trophic structures and overall ecosystem functions. The Tian-e-Zhou Oxbow of the Yangtze River is China’s first ex situ reserve and the world’s first successful case of ex situ conservation for cetaceans. In order to better protect the Yangtze finless porpoise, the effects of water-level fluctuations on the trophic structure in this oxbow cannot be ignored. Therefore, we employed stable isotope analysis to investigate the changes in the trophic position, trophic niche, and contribution of basal food sources to fish during the wet and dry seasons of 2021–2022. The research results indicate that based on stable isotope analysis of the trophic levels of different dietary fish species, fish trophic levels during the wet season were generally higher than those during the dry season, but the difference was not significant (p > 0.05). Fish communities in the Tian-e-Zhou Oxbow exhibited broader trophic niche space and lower trophic redundancy during the wet season (p < 0.05), indicating a more complex and stable food web structure. In both the wet and dry seasons, fish in the oxbow primarily relied on endogenous carbon sources, but there were significant differences in the way they were utilized between the two seasons (p < 0.05). In light of the changes in the trophic structure of the fish during the wet and dry seasons, and to ensure the stable development of the Yangtze finless porpoise population, we recommend strengthening the connectivity between the Tian-e-Zhou Oxbow and the Yangtze River.

The Kizil reservoir in the Tarim River basin is an important habitat for the native Schizothoracinae fish (including Aspiorhynchus laticeps, Schizothorax biddulphi, Schizothorax eurystomus, Schizothorax intermedius and Schizothorax barbatus). Unfortunately, these species are threatened by many exotic fish, such as Ctenopharyngodon idellus, Silurus asotus. As an isolated habitat, the Kizil reservoir is an ideal area for studying biological invasions. However, the impact of invasive species on indigenous species in this reservoir remains unknown. In this study, the niche width and niche overlap between invasive and indigenous species in Kizil reservoir were studied based on stable isotope analysis. The results showed that niche width of two invasive species, S. asotus and C. idellus, was larger than that of native fish species, which confirmed the hypotheses that successful invaders have larger niche width. The niche overlap analysis showed that the two invasive species had high niche overlap with native fish species, which meant that there might be intensive interspecific competitions between them. The invasion of non-native species could be the main reason for the decrease of native species in the Kizil reservoir.