Odette Rios-Ibacache

Ms. Odette Rios-Ibacache

orcid

Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 August 2023 in Diagnostics
Verified
Journal Article
Open access
PDF file
IDIgnacio Dominguez
Ignacio Dominguez
OROdette Rios-Ibacache
Odette Rios-Ibacache
PCPaola Caprile
Paola Caprile
JVJosé Miguel González del Valle
José Miguel González del Valle
IFIgnacio F San Francisco
Ignacio F San Francisco
CBCecilia Besa
Cecilia Besa
This study aimed to develop a noninvasive Machine Learning (ML) model to identify clinically significant prostate cancer (csPCa) according to Gleason Score (GS) based on biparametric MRI (bpMRI) radiomic features and clinical information. Methods: This retrospective study included 86 adult Hispanic men (60 ± 8.2 years, median prostate-specific antigen density (PSA-D) 0.15 ng/mL2) with PCa who underwent prebiopsy 3T MRI followed by targeted MRI–ultrasound fusion and systematic biopsy. Two observers performed 2D segmentation of lesions in T2WI/ADC images. We classified csPCa (GS ≥ 7) vs. non-csPCa (GS = 6). Univariate statistical tests were performed for different parameters, including prostate volume (PV), PSA-D, PI-RADS, and radiomic features. Multivariate models were built using the automatic feature selection algorithm Recursive Feature Elimination (RFE) and different classifiers. A stratified split separated the train/test (80%) and validation (20%) sets. Results: Radiomic features derived from T2WI/ADC are associated with GS in patients with PCa. The best model found was multivariate, including image (T2WI/ADC) and clinical (PV and PSA-D) information. The validation area under the curve (AUC) was 0.80 for differentiating csPCa from non-csPCa, exhibiting better performance than PI-RADS (AUC: 0.71) and PSA-D (AUC: 0.78). Conclusion: Our multivariate ML model outperforms PI-RADS v2.1 and established clinical indicators like PSA-D in classifying csPCa accurately. This underscores MRI-derived radiomics’ (T2WI/ADC) potential as a robust biomarker for assessing PCa aggressiveness in Hispanic patients.

17 January 2026 in Journal of Applied Clinical Medical Physics
Verified
Journal Article
Open access
OROdette Rios-Ibacache
Odette Rios-Ibacache
JMJames Manalad
James Manalad
KOKayla O'SUllivan‐Steben
Kayla O'SUllivan‐Steben
EPEmily Poon
Emily Poon
LGLuc Galarneau
Luc Galarneau
JKJohn Kildea
John Kildea
Background: Head and neck cancer (HNC) patients undergoing radiotherapy (RT) may experience anatomical changes during treatment, which can compromise the validity of the initial treatment plan, necessitating replanning. However, ad hoc replanning disrupts clinical workflows and increases workload. Currently, no standardized method exists to quantify anatomical variation that necessitates replanning. Purpose: This project aimed to create geometrical metrics to describe anatomical changes in HNC patients during RT. The usefulness of these metrics was evaluated by a univariate analysis and through machine learning (ML) models to predict the need for replanning. Methods: A cohort of 150 HNC patients treated at McGill University Health Centre was analyzed. Based on the shapes of the RT structures (body, PTV, mandible, neck, and submandibular contours), we developed 43 metrics and automatically calculated them through a Python pipeline that we called HNGeoNatomyX . Univariate analysis using linear regression was conducted to obtain the rate of change of each metric. We also obtained the relative variation of each metric between the pre‐treatment and replanning‐requested scans. Fraction‐specific ML models (incorporating information available up to and including the specific fraction) for fractions 5, 10, and 15 were built using metrics, clinical data, and feature selection techniques. Model performance was estimated with repeated stratified 5‐fold cross‐validation resampling technique and the area under the curve (AUC) of the receiver operating characteristic (ROC) curve. Results: Univariate analysis showed that body‐ and neck‐related metrics were most predictive of replanning need. Our best specific multivariate models for fractions 5, 10, and 15 yielded testing scores of 0.82, 0.70, and 0.79, respectively. Our models early predicted replanning for 76% of the true positives. Conclusions: The created metrics have the potential to characterize and distinguish which patients will necessitate RT replanning. They show promise in guiding clinicians to evaluate RT replanning for HNC patients and streamline workflows.

18 July 2025 in arXiv
Verified
Preprint
Open access
PDF file
OROdette Rios-Ibacache
Odette Rios-Ibacache
JMJames Manalad
James Manalad
KOKayla O'Sullivan-Steben
Kayla O'Sullivan-Steben
EPEmily Poon
Emily Poon
LGLuc Galarneau
Luc Galarneau
JKJohn Kildea
John Kildea
Head and neck cancer (HNC) patients who undergo radiotherapy (RT) may experience anatomical changes during treatment, compromising the validity of the initial treatment plan, necessitating replanning. However, replanning disrupts clinical workflows, creating a stressful environment. Currently, no standardized method exists to determine the total amount of anatomical change that necessitates replanning. This project aimed to create metrics to describe anatomical changes HNC patients may experience during RT and develop machine learning (ML) models to predict RT replanning. We included a cohort of 150 HNC patients treated at the McGill University Health Centre. Based on the shape of the RT structures, we created metrics and developed an extraction pipeline, called HNGeoNatomyX, to automatically calculate them. A univariate metric analysis using linear regression was conducted to obtain the rate of change of each metric. We also obtained the relative variation of each metric between the pre-treatment scan and the fraction at which replanning was requested. Fraction-specific ML models (models that incorporated information available up to and including the specific fraction) for fractions 5, 10, and 15 were built using the metrics, clinical data, and feature selection techniques. To estimate models' performance, we used a repeated stratified 5-fold cross-validation resampling technique and the Area Under the Curve (AUC) of the Receiver Operating Characteristic (ROC) curve. The best specific multivariate models for fractions 5, 10, and 15 yielded testing scores of 0.82, 0.70, and 0.79, respectively. Our models early predicted replanning for 76% of the true positives. The created metrics have the potential to characterize and distinguish which patients will necessitate RT replanning. They show promise in guiding clinicians to evaluate RT replanning for HNC patients and streamline workflows.