The hemibiotrophic pathogens Moniliophthora perniciosa (witches’ broom disease) and Moniliophthora roreri (frosty pod rot disease) are among the most important pathogens of cacao. Moniliophthora perniciosa has a broad host range and infects a variety of meristematic tissues in cacao plants, whereas M. roreri infects only pods of Theobroma and Herrania genera. Comparative pathogenomics of these fungi is essential to understand Moniliophthora infection strategies, therefore the detection and in silico functional characterization of effector candidates are important steps to gain insight on their pathogenicity. Candidate secreted effector proteins repertoire were predicted using the genomes of five representative isolates of M. perniciosa subpopulations (three from cacao and two from solanaceous hosts), and one representative isolate of M. roreri from Peru. Many putative effectors candidates were identified in M. perniciosa: 157 and 134 in cacao isolates from Bahia, Brazil; 109 in cacao isolate from Ecuador, 92 and 80 in wild solanaceous isolates from Minas Gerais (Lobeira) and Bahia (Caiçara), Brazil; respectively. Moniliophthora roreri showed the highest number of effector candidates, a total of 243. A set of eight core effectors were shared among all Moniliophthora isolates, while others were shared either between the wild solanaceous isolates or among cacao isolates. Mostly, candidate effectors of M. perniciosa were shared among the isolates, whereas in M. roreri nearly 50% were exclusive to the specie. In addition, a large number of cell wall-degrading enzymes characteristic of hemibiotrophic fungi were found. From these, we highlighted the proteins involved in cell wall modification, an enzymatic arsenal that allows the plant pathogens to inhabit environments with oxidative stress, which promotes degradation of plant compounds and facilitates infection. The present work reports six genomes and provides a database of the putative effectorome of Moniliophthora, a first step towards the understanding of the functional basis of fungal pathogenicity.

This study aimed to investigate the role of Se supply in improving osmotic stress tolerance in coffee seedlings while also evaluating the best timing for Se application. Five times of Se foliar application were assessed during induced osmotic stress with PEG-6000 using the day of imposing stress as a default, plus two control treatments: with osmotic stress and without Se, and without osmotic stress and Se. Results demonstrated that osmotic stress (OS) promoted mild stress in the coffee plants (ψw from −1.5MPa to −2.5 MPa). Control plants under stress showed seven and five times lower activity of the enzymes GR and SOD compared with the non-stressed ones, and OS was found to further induce starch degradation, which was potentialized by the Se foliar supply. The seedlings that received foliar Se application 8 days before the stress exhibited higher CAT, APX, and SOD than the absolute control (−OS-Se)—771.1%, 356.3%, and 266.5% higher, respectively. In conclusion, previous Se foliar spray is more effective than the Se supply after OS to overcome the adverse condition. On the other hand, the post-stress application seems to impose extra stress on the plants, leading them to reduce their water potential.

Drought stress has been considered a major problem in coffee crops, and the higher occurrence of unpredictable environmental events has highlighted the vulnerability of agricultural systems. Several reports have indicated selenium (Se) as a plant biostimulant against environmental stress, including drought. The effects of Se in plants are related to the modulation of enzymatic activity, energetics and osmoprotectants plant content, and nutrient balance in plants. However, investi-gating the effective time of Se application is crucial for better understanding its effects on coffee plants, a drought-sensitive crop. This study aimed to investigate the role of Se supply in improving drought tolerance in coffee seedlings while also evaluating the best timing for Se application. Five times of Se foliar application were assessed during induced drought stress by PEG-6000 using the day of imposing stress as a default, plus two control treatments: i) with osmotic stress and without Se; ii) without osmotic stress and Se. The treatments were compared with both control treatments. Results demonstrated that the osmotic stress (OS) promoted mild stress in the coffee plants, as ex-pected. Plants under stress showed reduced GR and SOD activity compared with the non-stressed ones, and the OS induces starch degradation, which is potentialized by Se foliar supply, mainly when Se is applied before inducing the stress. The decline in the starch content might be considered a strategy to provide energy to coffee seedlings. The seedlings that received foliar Se application 8 days before the stress exhibited higher CAT, APX, and SOD than those that did not receive OS nor Se application. The results obtained in this study suggest that the previous Se foliar spray is more effective than the Se supply after OS to overcome the adverse condition. On the other hand, the post-stress application seems to impose extra stress on the plants, leading them to reduce the water potential.

Cacao cultivation is an important economic and social activity for tropical regions worldwide. Elevated cadmium (Cd) concentrations in soil and cacao beans have become a serious concern for producers and consumers, particularly following the implementation of stricter Cd limits for cacao products in the European Union since 2019. Cadmium is a potentially toxic element that can bioaccumulate in different plant tissues, raising concerns about the future of cacao exports and posing a significant threat to the food chain through consuming products with high Cd concentrations. Therefore, understanding the origins of Cd in cacao-producing countries’ agricultural soils is essential. Equally important is the need to investigate the factors influencing its availability, uptake, translocation, and distribution within the cacao plant, in addition to strategies for mitigating its effects or reducing its concentration in agriculturally relevant tissues. This review aims to contextualize the sources of Cd in the cacao agroecosystems while highlighting recent advances and perspectives in applying essential and beneficial elements, selecting low-accumulator genotypes, and utilizing associated microbiota. These strategies seek to mitigate Cd bioaccumulation and minimize its negative impacts on the cocoa value chain.