The concept of a plant health system (PHS) is mainly anchored on experiences from human health where varied sources of knowledge, expertise, and technology are combined to provide healthcare. While diverse human health systems have been proven, little is known about PHS and what is needed to base effective plant healthcare services. A stakeholder analysis was carried out in Burundi. The aim is to understand the system as it is presently and to identify constraints and opportunities. This paper reports on the process and results of this assessment. The initial step in this process was to define PHS and its functions and to evaluate stakeholders’ interests and influence. The first step was followed by examining stakeholders’ perceptions concerning the sustainability of interventions geared at strengthening PHS functions. The process included a document review and stakeholder workshops. After the stakeholders defined the PHS functions, they proceeded to identify valuable actors. The assessment process highlighted several key challenges, including inadequate skills to serve farmers and insufficient capacity to diagnose pests, as significant impediments to effective PHS performance. Based on the information marshalled here, seven broad interventions are proposed for practitioners to strengthen Burundi’s PHS rapidly.

Banana is a key crop in the livelihoods of many people in the Great Lakes region of East and Central Africa. For more than a decade now, the crop has been threatened by Banana Xanthomonas Wilt (BXW) which has spread throughout the region but at different rates. The disease attacks all banana cultivars and can cause up to 100% yield losses at farm level if effective control measures are not put in place. However, limited information on impact of BXW at regional level is available to guide interventions. Thus, this study assessed the impact of BXW on farmers’ livelihoods in Kagera basin of Tanzania, Burundi and Rwanda. A total of 436 households (Tanzania 120, Burundi 208 and Rwanda 108) mostly from major banana-producing and BXW-affected districts were sampled and interviewed in a household survey. Thirty-three to seventy-five of the total banana mats per farm in the three countries were infected with BXW. Banana production losses caused by BXW were valued at US$ 10.2 million and US$ 2.95 million in Tanzania and Rwanda, respectively, banana sales by farmers dropped by 35% while bunch prices unpredictably doubled. Since banana is a key component of these farming communities, the banana production losses resulted in significant reduction in household food security and incomes. To cope with these challenges, most households are diversifying into other food crops such as maize, cassava and sweet potatoes. This poses a number of socio-economic and biological implications that require further investigation. Key words: Banana Xanthomonas Wilt incidence, economic loss, food security.

Banana is a staple food and cash crop grown in East and Central Africa (ECA). The main banana varieties grown in ECA are the East African highland bananas (EAHB), although dessert/beer bananas such as Sukari Ndizi, Kayinja (Pisang Awak) and Gros Michel are also produced due to their high value at local markets. The Fusarium wilt fungus Fusarium oxysporum f. sp. cubense (Foc) causes disease of susceptible dessert/beer bananas, which significantly reduces yields. Banana Fusarium wilt is managed by excluding the pathogen from disease-free areas and by planting disease-resistant varieties in infested fields. Six phylogenetically closely-related vegetative compatibility groups (VCGs) of Foc, VCGs 0124, 0125, 0128, 01212, 01220 and 01222 are present in ECA, which all group together in Foc Lineage VI. Rapid and accurate detection of Foc Lineage VI strains is thus important to prevent its spread to disease-free areas. In this study, molecular markers specific to Foc Lineage VI were therefore developed. Primer sets were then combined in a multiplex PCR assay, and validated on a worldwide population of 623 known Foc isolates, other formae speciales and non-pathogenic Fusarium oxysporum isolates. The Foc Lineage VI multiplex PCR was used to identify Foc isolates collected in banana fields at five locations in Uganda and Tanzania. Foc Lineage VI DNA was detected at a concentration as low as 0.1 ng/μl, both in the absence and presence of banana DNA, and can therefore be used as an accurate diagnostic tool for Foc Lineage VI strains.

Banana Fusarium wilt is a major production constraint globally and a significant threat to the livelihoods of millions of people in East and Central Africa (ECA). A proper understanding of the diversity and population dynamics of the causal agent, Fusarium oxysporum f. sp. cubense (Foc), could be useful for the development of sustainable disease management strategies for the pathogen. The current study investigated the diversity of Foc in ECA using vegetative compatibility group (VCG) analysis, PCR-RFLPs of the ribosomal DNA’s intergenic spacer region, as well as phylogenetic analysis of the elongation factor-1α gene. Six VCGs (0124, 0125, 0128, 01212, 01220, and 01222), which all belong to one lineage (Foc lineage VI), were widely distributed throughout the region. VCGs 0128 and 01220 are reported for the first time in Burundi, the Democratic Republic of Congo (DRC), Rwanda, Tanzania, and Uganda, while VCG 01212 is reported in the DRC and Rwanda. Isolates that did not belong to any of the known VCGs were identified as Foc lineage VI members by phylogenetic analysis and may represent novel VCGs. CAV 2734, a banana pathogen collected in Rwanda, clustered with nonpathogenic F. oxysporum isolates in lineage VIII. Results from this study will contribute significantly toward the implementation of banana Fusarium wilt disease management practices in the region, such as the restricted movement of infected planting material and the selective planting of resistant banana varieties.

Banana is an important food crop and source of income in Africa. Sustainable production of banana, however, is at risk because of pests and diseases such as Fusarium wilt, caused by the soil-borne fungus Fusarium oxysporum f. sp. cubense (Foc). Foc can be disseminated from infested to disease-free fields in plant material, water and soil. Early detection of Foc using DNA technologies is thus required to accurately identify the fungus and prevent its further dissemination with plants, soil and water. In this study, quantitative (q)PCR assays were developed for the detection of Foc Lineage VI strains found in central and eastern Africa (Foc races 1 and 2), Foc TR4 (vegetative compatibility groups (VCG) 01213/16) that is present in Mozambique, and Foc STR4 (VCG 0120/15) that occurs in South Africa. A collection of 127 fungal isolates were selected for specificity testing, including endophytic Fusarium isolates from banana pseudostems, non-pathogenic F. oxysporum strains and Foc isolates representing the 24 VCGs in Foc. Primer sets that proved to be specific to Foc Lineage VI, Foc TR4 and Foc STR4 were used to produce standard curves for absolute quantification, and the qPCR assays were evaluated based on the quality of standard curves, repeatability and reproducibility, and limits of quantification (LOQ) and detection (LOD). The qPCR assays for Foc Lineage VI, TR4 and STR4 were repeatable and reproducible, with LOQ values of 10⁻³–10⁻⁴ ng/μL and a LOD of 10⁻⁴–10⁻⁵ ng/μL. The quantitative detection of Foc strains in Africa could reduce the time and improve the accuracy for identifying the Fusarium wilt pathogen from plants, water and soil on the continent.