Pinus densiflora (Korean red pine) is widely distributed in East Asia and considered one of the most important species in Korea. In this study, the complete chloroplast genome of P. densiflora was sequenced by combining the advantages of Oxford Nanopore MinION and Illumina MiSeq. The sequenced genome was then compared with that of a previously published conifer plastome. The chloroplast genome was found to be circular and comprised of a quadripartite structure, including 113 genes encoding 73 proteins, 36 tRNAs and 4 rRNAs. It had short inverted repeat regions and lacked ndh gene family genes, which is consistent with other Pinaceae species. The gene content of P. densiflora was found to be most similar to that of P. sylvestris. The newly attempted sequencing method could be considered an alternative method for obtaining accurate genetic information, and the chloroplast genome sequence of P. densiflora revealed in this study can be used in the phylogenetic analysis of Pinus species.

Pine, an evergreen conifer, is widely distributed worldwide. It is economically, scientifically, and ecologically important. However, pine wilt disease (PWD) induced by the pine wood nematode (PWN) adversely affects pine trees. Many studies have been conducted on the PWN and its beetle vectors to prevent the spread of PWD. However, studies providing a comprehensive understanding of the pine tree transcriptome in response to PWN infection are lacking. Here, we performed temporal profiling of the pine tree transcriptome using PWD-infected red pine trees, Pinus densiflora, inoculated with the PWN by RNA sequencing. Our analysis revealed that defense-responsive genes involved in cell wall modification, jasmonic acid signaling, and phenylpropanoid-related processes were significantly enriched 2 weeks after PWD infection. Furthermore, some WRKY-type and MYB-type transcription factors were upregulated 2 weeks after PWD infection, suggesting that these transcription factors might be responsible for the genome-wide reprogramming of defense-responsive genes in the early PWD stage. Our comprehensive transcriptome analysis will assist in developing PWD-resistant pine trees and identifying genes to diagnose PWD at the early stage of infection, during which large-scale phenotypic changes are absent in PWD-infected pine trees.

Poplar (Populus) clones are widely used for riparian afforestation owing to their fast growth and ecological benefits. However, selecting suitable clones for site-specific conditions remains a key challenge. In this study, we evaluated the survival and growth performance of nine poplar clones belonging to three hybrid groups—Populus deltoides (D), P. deltoides × P. nigra (DN), and P. nigra × P. suaveolens (NS)—at two riparian sites in Korea. Significant differences were observed in the survival, height, diameter, basal area, and basal area increment (BAI) among clones and between sites. DN hybrids exhibited superior overall performance in both survival and growth traits compared to D and NS clones. In the DN group, clones Eco-28, I-476, and Dorskamp consistently ranked highest in aggregate performance. Notably, I-476 and Eco-28 demonstrated both high productivity and stability across sites, as reflected in their low coefficients of variation (CVs). In contrast, Dorskamp, while highly productive, showed relatively high variability across environments. These findings highlight DN hybrids—particularly Eco-28 and I-476—as promising candidates for riparian afforestation, offering a balanced combination of high productivity and environmental stability.

Poplar (Populus spp.) is an economically and ecologically important temperate tree species known for its rapid growth. Clonal propagation has facilitated genetic advancements, but it remains challenging due to substantial variations in rooting capacity among poplar species and clones. Poplar clones were divided into two groups based on their rooting ability (high or low), and their transcriptome was analyzed for 3 weeks following stem-cutting propagation to investigate the rooting mechanisms of a hybrid of two fast-growing poplar species (Populus alba × P. tomentiglandulosa). The root length and area of the high-rooting group were 668.7% and 198.4% greater than those of the low-rooting ability group, respectively (maximum p < 0.001). Compared to week 0, genes involved in auxin signaling, cell wall organization, and secondary metabolite biosynthesis were consistently upregulated at 1, 2, and 3 weeks after planting, respectively. The expression of genes associated with cell wall differentiation and flavonoid biosynthesis was greater in the high- than in the low-rooting group at week 2. MYB and AP2/ERF transcription factors, which regulate flavonoid biosynthesis, as well as chalcone isomerase, a key enzyme in early flavonoid biosynthesis and root formation, were upregulated in the high-rooting group. The flavonoid biosynthesis pathway is important in rooting after stem cutting of Populus alba × P. tomentiglandulosa hybrids.

South Korean forests need hardwood tree species that can produce timber, as global warming progresses and the habitats of conifers dwindle. For the past 30 years, exotic yellow poplar (Liriodendron tulipifera) has been planted to replace some of the pine-dominated forests, as there is a lack of native hardwood tree species that produce large and good quality timber. However, yellow poplar growth has varied among planting sites across the country. We studied how environmental factors affect the growth of 49 stands of yellow poplar trees, with 945 dominant trees across 129 plots. To identify the optimal conditions for yellow poplar growth, we assessed 28 environmental variables, including geographic, climatic, topographic, and soil properties, for their correlation with volume growth. We estimated the optimal conditions for yellow poplar growth by averaging the values of the variables for the top five performing stands. To calculate the relative distance of any stand from the optimal conditions, we divided the difference between the stand’s values for the environmental variables and the optimal conditions by the standard deviation of those variables. We then calculated Spearman rank correlation coefficients between these distances and volume growth rankings. Wind exposure (WE), growing season temperature (GT), Latitude (LN), soil phosphorus pentoxide (P₂O₅) content, low extreme temperature during January and February (LT), and spring humidity (SH) were the most important environmental factors governing growing sites for yellow poplar in Korea, with WE being the most critical. Some variables showed synergistic effects and correlated slightly more strongly with volume growth when combined with the WE variable. Our study provides crucial insights for optimizing plantation management and site selection in non-native ranges, enhancing overall success in establishing yellow poplar plantations in South Korea.