The relative content of chlorophyll, assessed through the soil and plant analyzer development (SPAD), serves as a reliable indicator reflecting crop photosynthesis and the nutritional status during crop growth and development. In this study, we employed machine learning methods utilizing unmanned aerial vehicle (UAV) multi-spectrum remote sensing to predict the SPAD value of litchi fruit. Input features consisted of various vegetation indices and texture features during distinct growth periods, and to streamline the feature set, the full subset regression algorithm was applied for dimensionality reduction. Our findings revealed the superiority of stacking models over individual models. During the litchi fruit development period, the stacking model, incorporating vegetation indices and texture features, demonstrated a validation set coefficient of determination (R²) of 0.94, a root mean square error (RMSE) of 2.4, and a relative percent deviation (RPD) of 3.0. Similarly, in the combined litchi growing period and autumn shoot period, the optimal model for estimating litchi SPAD was the stacking model based on vegetation indices and texture features, yielding a validation set R², RMSE, and RPD of 0.84, 3.9, and 1.9, respectively. This study furnishes data support for the precise estimation of litchi SPAD across different periods through varied combinations of independent variables.