Climate change, which leads to higher temperatures, droughts, and storms, is expected to have a strong effect on both health of forest trees and associated biodiversity. The aim of this study was to investigate the diversity and composition of fungal communities associated with the functional tissues and rhizosphere soil of healthy-looking Picea abies to better understand these fungal communities and their potential effect on tree health in the process of climate change. The study sites included 30 P. abies stands, where needles, shoots, roots, and the rhizosphere soil was sampled. DNA was isolated from individual samples, amplified using ITS2 rRNA as a marker and subjected to high-throughput sequencing. The sequence analysis showed the presence of 232,547 high-quality reads, which following clustering were found to represent 2701 non-singleton fungal OTUs. The highest absolute richness of fungal OTUs was in the soil (1895), then in the needles (1049) and shoots (1002), and the lowest was in the roots (641). The overall fungal community was composed of Ascomycota (58.3%), Basidiomycota (37.2%), Zygomycota (2.5%), Chytridiomycota (1.6%), and Glomeromycota (0.4%). The most common fungi based on sequence read abundance were Aspergillus pseudoglaucus (7.9%), Archaeorhizomyces sp. (3.6%), and Rhinocladiella sp. (2.0%). Pathogens were relatively rare, among which the most common were Phacidium lacerum (1.7%), Cyphellophora sessilis (1.4%), and Rhizosphaera kalkhoffii (1.4%). The results showed that the detected diversity of fungal OTUs was generally high, but their relative abundance varied greatly among different study sites, thereby highlighting the complexity of interactions among the host trees, fungi, and local environmental conditions.

The plant- and soil-associated microbial communities are critical to plant health and their resilience to stressors, such as drought, pathogens, and pest outbreaks. A better understanding of the structure of microbial communities and how they are affected by different environmental factors is needed to predict and manage ecosystem responses to climate change. In this study, we carried out a country-wide analysis of fungal communities associated with Pinus sylvestris growing under different environmental conditions. Needle, shoot, root, mineral, and organic soil samples were collected at 30 sites. By interconnecting the high-throughput sequencing data, environmental variables, and soil chemical properties, we were able to identify key factors that drive the diversity and composition of fungal communities associated with P. sylvestris. The fungal species richness and community composition were also found to be highly dependent on the site and the substrate they colonize. The results demonstrated that different functional tissues and the rhizosphere soil of P. sylvestris are associated with diverse fungal communities, which are driven by a combination of climatic (temperature and precipitation) and edaphic factors (soil pH), and stand characteristics.

We assessed the diversity and composition of fungal communities in different functional tissues and the rhizosphere soil of Pinus sylvestris and Picea abies stands along the latitudinal gradient of these tree species distributions in Europe to model possible changes in fungal communities imposed by climate change. For each tree species, living needles, shoots, roots, and the rhizosphere soil were sampled and subjected to high-throughput sequencing. Results showed that the latitude and the host tree species had a limited effect on the diversity and composition of fungal communities, which were largely explained by the environmental variables of each site and the substrate they colonize. The mean annual temperature and mean annual precipitation had a strong effect on root fungal communities, isothermality on needle fungal communities, mean temperature of the warmest quarter and precipitation of the driest month on shoot fungal communities, and precipitation seasonality on soil fungal communities. Fungal communities of both tree species are predicted to shift to habitats with a lower annual temperature amplitude and with increasing precipitation during the driest month, but the suitability of these habitats as compared to the present conditions is predicted to decrease in the future.

This study aimed to assess the changes in chemical properties and fungal communities in the upper mineral soil layer in managed Scots pine (Pinus sylvestris L.) ecosystems. Study sites were located in the three largest P. sylvestris massifs in Lithuania, and six sampling sites, representing different development stages of the P. sylvestris forest ecosystem, were selected in each of them: mature P. sylvestris forest stands; clear-cuts of former P. sylvestris mature stand; and the P. sylvestris plantations aging from the 1st to 4th year. High-throughput sequencing was performed to evaluate the soil fungus community at clear-cuts, early-stage reforested sites, and mature forests in Lithuania. This study has shown that, among other chemical soil parameters, the mean concentrations of mineral nitrogen (N), total phosphorus (P), and P₂O₅ were slightly higher in the clear-cut sites, and significantly higher in the 1st year plantations compared to the mature forests. The quality filtering after PacBio sequencing showed the presence of 60,898 high-quality fungal sequences, and 1143 fungal operational taxonomic units (OTUs). The most abundant fungal OTU in our study was Archaeorhizomyces sp. 5425_1. In total, 70 mycorrhizal fungal OTUs were found in the soil samples at the studied sites. The most abundant ectomycorrhizal fungus identified was Amanita fulva (Schaeff.) Fr. The highest amount of ectomycorrhizal fungal OTUs was found in the clear-cut sites and in the mature forests. The concentrations of mineral N and P₂O₅ in the upper mineral soil layer did not significantly affect fungal OTUs diversity. Conversely, a relatively strong correlation was obtained between the number of mycorrhizal fungal OTUs and the concentrations of total N and soil organic carbon (SOC), as well as between the numbers of saprotrophic fungal OTUs and the concentration of magnesium ions (Mg²⁺).

The aim of the present work was to study seasonal and site-specific patterns of airborne fungal diversity, focusing on plant pathogens. The sampling of fungal spores was carried out for twelve months, i.e., between September 2017 and August 2018, using passive spore traps that were placed at three different sites in western (Lenkimai), central (Dubrava), and eastern (Labanoras) Lithuania. Samples were collected every 7–10 days, resulting in 146 samples altogether. Following DNA isolation, samples were individually amplified using ITS2 rRNA as a marker and subjected to high-throughput sequencing. Clustering and taxonomic classification of 283,006 high-quality reads showed the presence of 805 non-singleton fungal taxa. The detected fungi were 53.4% Ascomycota, 46.5% Basidiomycota, and 0.1% Mucoromycota. The most common fungal taxon at Labanoras and Lenkimai was Hannaella coprosmae (23.2% and 24.3% of all high-quality fungal sequences, respectively), while at Dubrava it was Cladosporium macrocarpum (16.0%). In different sites, plant pathogenic fungi constituted between 1.6% and 14.6% of all fungal taxa and among these the most common were Protomyces inouyei (4.6%) and Sydowia polyspora (1.9%). The results demonstrated that the diversity of airborne fungi was mainly determined by the surrounding vegetation and climatic factors, while the occurrence of pathogenic fungi was affected by the availability of their hosts.

Outbreaks of Lymantria monacha are of great concern, as their occurrence is predicted to become more intense and frequent due to a warming climate. A frequent treatment to control mass outbreaks of the pest is with the bioinsecticide Foray 76B. However, knowledge of how this treatment affects non-target insect species is limited. We surveyed the assemblages of non-target epigeal and arboreal insects in Pinus sylvestris forests in the year following bioinsecticide application. A collection of insects using sweep nets and pitfall traps was carried out in L. monacha-infested pine stands, (i) treated with Foray 76B and (ii) untreated, in three regions of Lithuania from May to October 2021. The results revealed that, in Neringa forests, species richness of the epigeal insects was lower in treated than in untreated sampling plots, with 36 and 41 different insect species, respectively. The relative abundance of epigeal Coleoptera in treated plots was 3.6%, while in untreated it was 53.2%. There was a significant decrease in the relative abundance of Carabus arcencis in Kapčiamiestis (by 7.4%) and Marcinkonys (by 16.7%). Treated plots were distinguished by lower relative abundance of arboreal Hymenoptera at all three study locations.