Seed germination is among the most crucial and vulnerable stages in plant life cycles. Quercus marlipoensis is a critically endangered sclerophyllous oak. Only one population has ever been found worldwide in the tropical montane cloud forests of southeastern Yunnan, China, and it has shown difficulties with regeneration. However, its seed biological traits and key restrictive germination factors remain unknown. We investigate the impacts of scarification, temperature, and water potential on the seed germination of Q. marlipoensis. Results show that the seeds show typical epicotyl dormancy. The seed germination increased when removing part or all of the pericarp and part of the cotyledon (one-third and two-thirds). The seeds can germinate at 5 to 30 °C, but the highest T₅₀ was achieved at 25 °C. When the water potential decreased from 0 to −1.0 MPa, the germination rate decreased but the germination time increased. Q. marlipoensis seeds are typically recalcitrant and highly sensitive to moisture loss, but the species can tolerate animal predation and low germination temperatures. The more frequent climatic extremes and droughts in the Indo-China region will severely degrade its natural habitats. Therefore, ex situ conservation to preserve its germplasm and introduce seedlings into a suitable habitat are essential for its conservation management.

Quercus longispica is a dominant shrub in the Himalayan subalpine region, demonstrating high levels of persistence despite high seed predation and extreme climatic conditions. However, its seed germination ecology and adaptations for seedling recruitment remain poorly understood. This study investigated the effects of temperature, water potential, and insect damage on seed germination and seedling establishment. Pre-germination seed traits and seed-to-seedling ontogeny were systematically analyzed. Our results demonstrated that seed germination percentages decreased with increasing insect damage across all temperature and water potential treatments. Cool temperatures (5–10 °C) yielded the highest germination percentages, potentially due to the suppression of parasitoid activity and mildew growth. While drought conditions also suppressed parasitoid activity, they significantly increased seed mortality. Despite a decline in seedling performance with increasing seed damage, overall seedling establishment remained robust. Several adaptive traits enable Q. longispica to persist in its harsh environment. Multi-seeded, non-apical embryos combined with rapid germination help embryos evade or escape damage from parasitism and predation. The rapid elongation of cotyledonary petioles pushes the embryo axis into the soil, with rapid nutrient and water transfer from the cotyledon to the taproot, thereby avoiding the threats of predation, drought, cold, and wildfire. Additionally, temperature-regulated epicotyl dormancy at the post-germination stage prevents the emergence of cold-intolerant seedlings in winter. This study provides the first comprehensive description of seed-to-seedling ontogeny in this Himalayan subalpine oak, offering crucial insights into the adaptive mechanisms that facilitate successful seedling recruitment in the challenging subalpine habitats.

The genus Quercus is an ecological keystone and economically vital component of Northern Hemisphere forests. While genomic studies have advanced our understanding of its nuclear and chloroplast genomes, the mitochondrial genomes of oaks remain less explored due to their complex evolutionary dynamics, which include extreme size variation, frequent rearrangements, and recurrent horizontal gene transfer. This study presents the assembly, annotation, and comparative analysis of mitogenomes from three closely related Asian oaks—Q. engleriana, Q. kongshanensis, and Q. tungmaiensis—using PacBio HiFi sequencing. The assemblies revealed distinct structural organizations: the Q. engleriana and Q. kongshanensis mitogenomes each comprised one circular contig and one linear contig, whereas the Q. tungmaiensis mitogenome comprised one circular contig and two linear contigs. Comparative analyses revealed variations in codon usage bias, simple sequence repeats, and predicted RNA editing sites. Notably, RNA editing in rps12 was uniquely observed in Q. kongshanensis. Mitochondrial targeting of plastid transcripts constituted 1.39%, 1.79%, and 2.24% of the mitogenomes, respectively. Phylogenetic reconstruction based on mitochondrial PCGs robustly resolved Q. kongshanensis and Q. tungmaiensis as sister species, with all three forming a distinct clade separate from other Quercus species. This study provides comprehensive mitogenomic resources essential for elucidating Quercus evolutionary biology and supporting germplasm development.