The plant rhizosphere underlies the crosstalk between plant and soil and has a crucial role in plant growth and development under various environments. We examined the effect of temperature rise on the rhizosphere environment of soybean roots to clarify the rhizosphere crosstalk between roots and soil in response to warm temperature rises in a global warming background. The in situ results of root enzyme activity revealed that soybean roots secrete β-glucosidase, and enzyme spectrum imaging demonstrated different enzymatic activities under different temperature environments. The soil enzyme kinetics results showed that soil enzymatic activity increased with increasing temperature, and soybean rhizosphere soil enzymatic activity was higher than that of non-rhizosphere soil. Rhizosphere soil and non-rhizosphere soil showed that the dominant bacterial phylum in soybean rhizosphere soil was Acidobacteria, and the dominant bacterial genus was JG30-KF-AS9. Compared with non-rhizosphere soil, rhizosphere soil was more nutrient-rich, and root secretions provided abundant carbon sources and other nutrients for soil microorganisms in the rhizosphere. Rhizosphere microorganisms affect plant growth by influencing the decomposition of soil organic carbon. The organic carbon content of rhizosphere soil was higher than that of non-rhizosphere soil under high temperatures.

Rotation and organic material addition (e.g., biochar) are major measures to improve soil quality, but the improvement effects and mechanisms of their combination on soil quality remain unclear; the relationship between the physical, chemical, and biological parameters was has not been adequately detected in terms of the change in quality after biochar addition. This study selected corn straw biochar as the material and established two biochar application methods: biochar mixed in 0–20 cm soil depth (B1) and biochar mixed in 0–40 cm soil depth (B2). After 3 years of maize–bean rotation, soil samples from 0–20 cm and 20–40 cm were collected to determine the soil’s physical, chemical, and biological properties, as well as crop yields. Principal component analysis was used to establish a minimum data set for the systematic analysis of soil quality and its factors. The results showed that compared with the control (CK), biochar reduced soil bulk density by 3.1% and electrical conductivity by 19.5–28.25% while increasing soil organic matter content by 7.2%, ammonium nitrogen content by 6.7–12.0%, available nitrogen content by 6.7–18.5%, available phosphorus content by 15.6–23.8%, available potassium content by 11.6–17.3%, soil urease activity by 12.25–21.6%, soil sucrase activity by 6.8–30.8%, soil neutral phosphatase activity by 5.6–9.7%, and soil catalase activity by 13.6%. Four indicators, namely bulk density, water content, pH, and nitrate nitrogen, were selected from 16 soil-quality-related indicators to form the minimum data set (MDS), and the soil quality index was calculated. Biochar application significantly increased the soil quality index (SQI) of rotation soil by 14.6–63.3% and crop yields by 5.6–7.2%. A random forest analysis of soil indicators and crop yields, combined with partial least squares structural equation modeling, revealed that biological indicators—particularly catalase activity—showed significant positive correlations with crop yields. Based on these multi-dimensional analyses, the interaction between rotation systems and biochar application improves the quality of mollisol soil plow layers by reducing bulk density and increasing catalase activity.

Lodging of soybean (Glycine max (L.) Merril.) significantly reduces seed yield and quality, particularly in high-yielding environments. This phenomenon occurs when stems weaken under the weight of the plants, complicating harvesting. This study investigated the relationship between soybean stem chemical composition, physical traits, and lodging resistance to improve yield and resilience. We found that as plant density increased, stem hardness decreased, and the elasticity increased, heightening the risk of lodging. Conversely, high temperature (28 °C) boosted lignin, cellulose and pectin content in the stem cell walls, enhancing the lodging resistance. Additionally, after excluding differences in phylogenetic relationships through cluster analysis, we mapped environment-stable genes linked to lodging resistance and identified new QTLs on Chr3 and Chr16. Candidate genes associated with these QTLs were confirmed using qRT–PCR and hormone treatments across diverse soybean varieties. It was found that the expression of stem tip genes was closely related to stem node diameter. These findings provide a theoretical foundation for breeding high-yielding soybean varieties with improved lodging resistance, and advance efforts to develop resilient soybean cultivars.

Cuticular waxes form a crucial hydrophobic barrier on the surface of aboveground organs in terrestrial plants. It strongly influences crop stress tolerance and yield stability, making them important target traits in modern crop breeding. This review systematically summarizes recent advances in how cuticular waxes contribute to crop stress tolerance and yield formation. It covers the chemical composition of cuticular waxes, key pathways and regulatory networks, and the physiological and biochemical mechanisms. In addition, this review highlights the role of cuticle waxes in maintaining crop yield and quality by regulating essential physiological processes, including photosynthetic metabolism and water-use efficiency. Current research indicates that cuticular wax accumulation shows strong crop-specific patterns and is dynamically regulated by environmental factors. Breakthrough studies in major crops have clarified the regulatory mechanisms of several core genes and demonstrated that cuticular waxes enhance stress resistance by strengthening physical barriers, improving water-use efficiency, and protecting photosynthetic structures. A deeper understanding of cuticular wax regulatory mechanisms will help reveal the molecular basis of crop stress resistance and provide both theoretical support and practical guidance for breeding crop varieties with enhanced stress tolerance and stable yields.

Phytochrome-interacting factors (PIFs) play a crucial role in regulating plant growth and development. However, studies on soybean PIFs are limited. Here, we identified 22 GmPIF genes from the soybean genome and classified the GmPIF proteins into 13 subfamilies based on amino acid sequence homology, secondary and tertiary structures, protein structure, and conserved motifs. Genome-wide collinearity analysis revealed that fragment duplication events play a dominant role in expanding the GmPIF gene family. Cis-acting element analysis revealed that the GmPIF gene family is involved in light response, hormone response, biotic–abiotic stress response elements, and plant growth and development. Gene expression analysis in different temperature environments showed that the GmPIF family was found to be induced by phytohormone treatments, with a significant increase in the expression level of GmPIF3g. GmPIF3g plays a key role in the regulation of the entire network, and in addition, 30 proteins interacting with the GmPIF3g promoter were identified through the use of a novel biofilm interference technique. This technique showed that the transcription factor Dof (DNA binding with one finger) binds to the GmPIF3g promoter, and Y1H assays indicated that Dof regulates its expression by binding to the PIF promoter. These results provide a theoretical basis for further studies on the regulatory network of GmPIF genes to improve the structure of soybean plants under shade environments, as well as a new method for analyzing regulatory elements that interact with gene promoters.

To investigate the long-term effects of organic manure on soil macro-porosity and nutrient stoichiometry in greenhouse production, we studied the physical and chemical properties of soils under different vegetable systems in Jiangsu Province. These systems included organic greenhouse vegetable (OGV), organic open-field vegetable (OFV), conventional greenhouse vegetable (CGV), and conventional open-field vegetable (CFV), with rice–wheat rotation (RWR) soils used as a reference.The results showed that, compared to conventional systems, organic vegetable production increased soil macro-porosity, soil organic carbon (SOC), and total nitrogen (TN) content, as well as C:N, C:P, and N:P, particularly in the tilled layer. SOC, TN, and total phosphorus (TP) levels increased rapidly during the first 14 years of OGV cultivation, followed by a decline. SOC, TN, and stoichiometric ratios were significantly positively correlated with soil macro-porosity. The study suggests that converting RWR to OGV does not degrade soil aeration, and long-term application of organic manure positively impacts nutrient retention in the tilled layer, although the effects are time- and depth-dependent. The study highlights the potential of long-term organic manure application to improve soil aeration and nutrient balance in OGV, underscoring the importance of optimizing fertilizer management in intensive agriculture to enhance soil quality and crop yield.