Nikolay Kuzmich

Dr. Nikolay Kuzmich

orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 October 2017 in Vaccines
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NKNikolay Kuzmich
Nikolay Kuzmich
KSKonstantin Sivak
Konstantin Sivak
VCVladimir N. Chubarev
Vladimir N. Chubarev
YPYuri Porozov
Yuri Porozov
TSTatiana N. Savateeva-Lyubimova
Tatiana N. Savateeva-Lyubimova
FPFrancesco Peri
Francesco Peri
Toll-Like Receptor 4 (TLR4) signal pathway plays an important role in initiating the innate immune response and its activation by bacterial endotoxin is responsible for chronic and acute inflammatory disorders that are becoming more and more frequent in developed countries. Modulation of the TLR4 pathway is a potential strategy to specifically target these pathologies. Among the diseases caused by TLR4 abnormal activation by bacterial endotoxin, sepsis is the most dangerous one because it is a life-threatening acute system inflammatory condition that still lacks specific pharmacological treatment. Here, we review molecules at a preclinical or clinical phase of development, that are active in inhibiting the TLR4-MyD88 and TLR4-TRIF pathways in animal models. These are low-molecular weight compounds of natural and synthetic origin that can be considered leads for drug development. The results of in vivo studies in the sepsis model and the mechanisms of action of drug leads are presented and critically discussed, evidencing the differences in treatment results from rodents to humans.

1 July 2017 in Russian Journal of Bioorganic Chemistry
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Journal Article
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KSK. V. Savateev
K. V. Savateev
EUEvgeny N. Ulomsky
Evgeny N. Ulomsky
VFVictor V. Fedotov
Victor V. Fedotov
VRV. L. Rusinov
V. L. Rusinov
KSK. V. Sivak
K. V. Sivak
AAA. G. Aleksandrov
A. G. Aleksandrov
Promising 6-nitro-1,2,4-triazolo[1,5-a]pyrimidine analogues, structural analogues of synthetic inhibitors of adenosine receptors, were sorted out on the basis of quantum-chemical calculations. The compounds were synthesized by nitration and chlorodeoxygenation reactions. The in vivo activity of 6-nitroheterocycles was studied and the affinity to adenosine receptor A2A was demonstrated in regard to septic conditions.

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Nurbubu MoldogazievaNurbubu Moldogazieva
Nurbubu Moldogazieva
DODaria Ostroverkhova
Daria Ostroverkhova
NKNikolay Kuzmich
Nikolay Kuzmich
VKVladimir Kadochnikov
Vladimir Kadochnikov
ATAlexander A. Terentiev
Alexander A. Terentiev
YPYuri Porozov
Yuri Porozov
Alpha-fetoprotein (AFP) is a major embryo- and tumor-associated protein capable of binding and transporting a variety of hydrophobic ligands, including estrogens. AFP has been shown to inhibit estrogen receptor (ER)-positive tumor growth, which can be attributed to its estrogen-binding ability. Despite AFP having long been investigated, its three-dimensional (3D) structure has not been experimentally resolved and molecular mechanisms underlying AFP–ligand interaction remains obscure. In our study, we constructed a homology-based 3D model of human AFP (HAFP) with the purpose of molecular docking of ERα ligands, three agonists (17β-estradiol, estrone and diethylstilbestrol), and three antagonists (tamoxifen, afimoxifene and endoxifen) into the obtained structure. Based on the ligand-docked scoring functions, we identified three putative estrogen- and antiestrogen-binding sites with different ligand binding affinities. Two high-affinity binding sites were located (i) in a tunnel formed within HAFP subdomains IB and IIA and (ii) on the opposite side of the molecule in a groove originating from a cavity formed between domains I and III, while (iii) the third low-affinity binding site was found at the bottom of the cavity. Here, 100 ns molecular dynamics (MD) simulation allowed us to study their geometries and showed that HAFP–estrogen interactions were caused by van der Waals forces, while both hydrophobic and electrostatic interactions were almost equally involved in HAFP–antiestrogen binding. Molecular mechanics/Generalized Born surface area (MM/GBSA) rescoring method exploited for estimation of binding free energies (ΔGbind) showed that antiestrogens have higher affinities to HAFP as compared to estrogens. We performed in silico point substitutions of amino acid residues to confirm their roles in HAFP–ligand interactions and showed that Thr132, Leu138, His170, Phe172, Ser217, Gln221, His266, His316, Lys453, and Asp478 residues, along with two disulfide bonds (Cys224–Cys270 and Cys269–Cys277), have key roles in both HAFP–estrogen and HAFP–antiestrogen binding. Data obtained in our study contribute to understanding mechanisms underlying protein–ligand interactions and anticancer therapy strategies based on ERα-binding ligands.

18 May 2017 in European Journal of Organic Chemistry
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NCNikita Chernov
Nikita Chernov
RSRoman V. Shutov
Roman V. Shutov
VSVladimir V. Sharoyko
Vladimir V. Sharoyko
NKNikolay Kuzmich
Nikolay Kuzmich
ABAlexander V. Belyakov
Alexander V. Belyakov
IYIgor P. Yakovlev
Igor P. Yakovlev

1 March 2016 in Molecular Biology
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KSKonstantin Sivak
Konstantin Sivak
AVAndrey Vasin
Andrey Vasin
Vladimir EgorovVladimir Egorov
Vladimir Egorov
Vladimir Borisovich TsvetkovVladimir Borisovich Tsvetkov
Vladimir Borisovich Tsvetkov
NKNikolay Kuzmich
Nikolay Kuzmich
OKO. I. Kiselev
O. I. Kiselev
Sepsis is a generalized infection accompanied by response of the body that manifests in a clinical and laboratory syndrome, namely, in the systemic inflammatory response syndrome (SIRS) from the...

1 January 2016 in Molekulârnaâ biologiâ
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Journal Article
Closed access
ВЦВ. Б. Цветков
В. Б. Цветков
KSKonstantin Sivak
Konstantin Sivak
AVAndrey Vasin
Andrey Vasin
VEV. V. Egorov
V. V. Egorov
Vladimir Borisovich TsvetkovVladimir Borisovich Tsvetkov
Vladimir Borisovich Tsvetkov
OKO. I. Kiselev
O. I. Kiselev
Sepsis is a generalized infection accompanied by response of the body that manifests in a clinical and laboratory syndrome, namely, in the systemic inflammatory response syndrome (SIRS) from the organism to the infection. Although sepsis is a widespread and life-threatening disease, the assortment of drugs for its treatment is mostly limited by antibiotics. Therefore, the search for new cellular targets for drug therapy of sepsis is an urgent task of modern medicine and pharmacology. One of the most promising targets is the adenosine A(2A) receptor (A(2A)AR). The activation of this receptor, which is mediated by extracellular adenosine, manifests in almost all types of immune cells (lymphocytes, monocytes, macrophages, and dendritic cells) and results in reducing the severity of inflammation and reperfusion injury in various tissues. The activation of adenosine A(2A) receptor inhibits the proliferation of T cells and production of proinflammatory cytokines, which contributes to the activation of the synthesis of anti-inflammatory cytokines, thereby suppressing the systemic response. For this reason, various selective A(2A)AR agonists and antagonists may be considered to be drug candidates for sepsis pharmacotherapy. Nevertheless, they remain only efficient ligands and objects of pre-clinical and clinical trials. This review examines the molecular mechanisms of inflammatory response in sepsis and the structure and functions of A(2A)AR and its role in the pathogenesis of sepsis, as well as examples of using agonists and antagonists of this receptor for the treatment of SIRS and sepsis.