Zheng Yan

Dr. Zheng Yan

orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
7 April 2023 in Animals
Verified
Journal Article
Open access
PDF file
ZYZheng Yan
Zheng Yan
QXQin Xu
Qin Xu
YYYing Yao
Ying Yao
JAJames Edward Ayala
James Edward Ayala
RHRong Hou
Rong Hou
HWHairui Wang
Hairui Wang
Climate change-induced food shortages pose major threats to wildlife conservation, and the exclusive reliance of giant pandas on bamboo makes them particularly vulnerable. The aim of this study was to provide insight into the reasons for the foraging strategies of giant pandas to selectively forage for different bamboo parts (bamboo shoot, culm, and leaf) during different seasons. This study used a metabolomic approach to analyze the fecal metabolites of giant pandas and conducted a correlation analysis with their gut microbiota. The results indicate that the fecal metabolites of giant pandas differ significantly depending on the bamboo parts they forage on, with higher sugar content observed when they consume bamboo culm with high fiber content. By functional annotation, culm group metabolites were enriched in the galactose metabolic pathway, while shoot group metabolites were enriched in the phenylalanine, tyrosine and tryptophan biosynthesis pathways. Moreover, Streptococcus showed a significant positive correlation with glucose and acetic acid content. Therefore, the foraging strategy of giant pandas is based on the ability to utilize the nutrient content of different bamboo parts. Captive feeding and habitat construction should enrich bamboo species to allow them to express their natural foraging strategies and improve their welfare and reproductive status.
1

1 April 2024 in Ecology and Evolution
Verified
Journal Article
Open access
ZYZheng Yan
Zheng Yan
YLYinghu Lei
Yinghu Lei
PZPengpeng Zhao
Pengpeng Zhao
DZDanhui Zhang
Danhui Zhang
JSJiena Shen
Jiena Shen
DLDingzhen Liu
Dingzhen Liu
The issue of poor sexual performance of some male giant pandas seriously impairs the growth and the genetic diversity of the captive population, yet there is still no clear understanding of the cause of the loss of this ability and its underlying mechanism. In this study, we analyzed the gut microbiota and its function in 72 fecal samples obtained from 20 captive male giant pandas, with an equal allocation between individuals capable and incapable of natural mating. Additionally, we investigated fecal hormone levels and behavioral differences between the two groups. A correlation analysis was then conducted among these factors to explore the influencing factors of their natural mating ability. The results showed significant differences in the composition of gut microbiota between the two groups of male pandas. The capable group had significantly higher abundance of Clostridium sensu stricto 1 (padjusted = .0021, GLMM), which was positively correlated with fatty acid degradation and two‐component system functions (Spearman, padjusted < .05). Additionally, the capable group showed higher gene abundance in gut microbiota function including purine and pyrimidine metabolism and galactose metabolism, as well as pathways related to biological processes such as ribosome and homologous recombination (DEseq2, padjusted < .05). We found no significant differences in fecal cortisol and testosterone levels between the two groups, and no difference was found in their behavior either. Our study provides a theoretical and practical basis for further studying the behavioral degradation mechanisms of giant pandas and other endangered mammal species.

5 June 2025 in Communications Biology
Verified
Journal Article
Open access
PDF file
ZYZheng Yan
Zheng Yan
YYYing Yao
Ying Yao
QXQin Xu
Qin Xu
XHXin He
Xin He
XZXinyu Zhou
Xinyu Zhou
HWHairui Wang
Hairui Wang
The impact of dietary microorganisms on host microbiota is recognized, but the underlying mechanisms remain unclear. This study examined the effects of bamboo surface microbiota, including virulence factors, antibiotic resistance genes (ARGs), and mobile genetic elements from different bamboo parts (leaves, shoots, and culms), on giant panda gut microbiota using three pairs of twins. Results showed that bamboo and fecal samples shared 1670 microbial species, with shoot surface microbiota contributing the highest proportion (21%, Bayesian source tracking) of contemporaneous gut microbiota, primarily by increasing abundances of Escherichia coli and ARGs. Klebsiella pneumoniae and Salmonella enterica also showed high co-occurrence in both bamboo and fecal samples, indicating potential colonization. Additionally, Streptococcus suis, Acinetobacter, and Mycobacterium progressively declined in fecal samples as bamboo shoot intake increased, suggesting these microbes are likely transient. The findings emphasize the impact of foodborne microorganisms on the host and the importance of conservation management.

24 October 2023 in Veterinary Sciences
Verified
Journal Article
Open access
PDF file
ZYZheng Yan
Zheng Yan
XHXin He
Xin He
JAJames Ayala
James Ayala
QXQin Xu
Qin Xu
XYXiaoqiang Yu
Xiaoqiang Yu
HWHairui Wang
Hairui Wang
The spread of antibiotic resistance genes (ARGs) in the environment exacerbates the contamination of these genes; therefore, the role plants play in the transmission of resistance genes in the food chain requires further research. Giant pandas consume different bamboo parts at different times, which provides the possibility of investigating how a single food source can affect the variation in the spread of ARGs. In this study, metagenomic analysis and the Comprehensive Antibiotic Resistance Database (CARD) database were used to annotate ARGs and the differences in gut microbiota ARGs during the consumption of bamboo shoots, leaves, and culms by captive giant pandas. These ARGs were then compared to investigate the impact of bamboo part consumption on the spread of ARGs. The results showed that the number of ARGs in the gut microbiota of the subjects was highest during the consumption of bamboo leaves, while the variety of ARGs was highest during the consumption of shoots. Escherichia coli, which poses a higher risk of ARG dissemination, was significantly higher in the leaf group, while Klebsiella, Enterobacter, and Raoultella were significantly higher in the shoot group. The ARG risk brought by bamboo shoots and leaves may originate from soil and environmental pollution. It is recommended to handle the feces of giant pandas properly and regularly monitor the antimicrobial and virulence genes in their gut microbiota to mitigate the threat of antibiotic resistance.
1

1 January 2024 in Conservation Physiology
Verified
Journal Article
Open access
PDF file
ZYZheng Yan
Zheng Yan
XLXiaoyan Liu
Xiaoyan Liu
HLHaoqiu Liu
Haoqiu Liu
HXHaihong Xu
Haihong Xu
YLYanhui Liu
Yanhui Liu
DLDingzhen Liu
Dingzhen Liu
Concerted conservation efforts have brought the giant panda (Ailuropoda melanoleuca) back from the brink of extinction, but pandas continue to face anthropogenic threats in the wild and breeding success in captivity remains low. Because stress can have detrimental impacts on reproduction, monitoring stress- and sex-steroid levels would help assess the effectiveness of conservation mitigation measures in panda populations as well as monitor the welfare and reproductive health of captive animals. In this proof-of-concept study, we used faecal sex steroid and cortisol concentrations (n = 867 samples collected from five males and five females at Beijing Zoo every 4 days over the course of 12 months) as a reference to investigate if testosterone, estradiol, progesterone and cortisol can be meaningfully measured in panda hair (n = 10) using radio-immuno-assays. Additionally, we calculated the ratio of testosterone to cortisol (T:C ratio) for each male, which can provide a biomarker of stress and physical performance. Our findings revealed distinct monthly variations in faecal sex-steroid and cortisol concentrations, reflecting reproductive seasonality and visitor-related stress among individual pandas. Notably, the oldest male had a significantly lower T:C ratio than other males. Our results confirm that the level of sex steroids and cortisol can be assayed by panda hair, and the hair cortisol concentrations correlate significantly with that in faeces with one month lag behind (r = 0.68, P = 0.03). However, the concentrations of hormones detected in saliva are lower than those in faeces by two orders of magnitude, making it difficult to ensure accuracy. By assessing the applicability of hair, faecal and salivary sampling, we can infer their utility in monitoring the reproductive status and acute and chronic stress levels of giant pandas, thereby providing a means to gauge the success of ongoing habitat restoration efforts and to discuss the feasibility of sample collection from wild populations.

18 November 2025 in Current Biology
Verified
Journal Article
Open access
WDWennan Dai
Wennan Dai
LLLiangyu Lu
Liangyu Lu
HQHualong Qiu
Hualong Qiu
JZJiamei Zhong
Jiamei Zhong
SLSiquan Ling
Siquan Ling
ZYZheng Yan
Zheng Yan
Ants employ a wide range of communication systems to coordinate colony functions, with chemical signals being the most extensively studied. While investigating social regulation in the invasive fire ant Solenopsis invicta, we discovered a striking behavior: under food-deprived conditions, workers frequently cannibalize a high proportion of virgin queens. Our experiments revealed that this behavior is triggered by nutritional stress and mediated by a specific vibrational signal (stridulation) produced by workers and directed at young queens. Chemical analyses showed no significant differences in cuticular hydrocarbons between targeted and non-targeted queens, providing no evidence that chemical cues are responsible for this behavior. In contrast, playback experiments demonstrated that queen cannibalism is directly induced by vibrational signals. These findings uncover a previously unrecognized role for stridulation in regulating social behavior and challenge the notion that non-chemical communication is secondary in ants.