James Edward Ayala

Mr. James Edward Ayala


Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 September 2022 in Animals
Verified
Journal Article
Open access
PDF file
XZXiaohui Zhang
Xiaohui Zhang
XWXueying Wang
Xueying Wang
JAJames Edward Ayala
James Edward Ayala
YLYuliang Liu
Yuliang Liu
JAJunhui An
Junhui An
Mingyue ZhangMingyue Zhang
Mingyue Zhang
Maternal deprivation (MD) in early life induces dysbiosis in the host gut microbiota, which is a key determinant of abnormal behavior in stress model individuals. Compared with the early parenting environment of the wild, captive giant pandas face frequent and premature maternal separation. Will this lead to imbalance in intestinal flora and stress in captive giant pandas? The purpose of this research is to evaluate the possible adverse effects of the traditional parenting mode on the gut microbiota of captive giant pandas. The results showed that the frequent and premature maternal separation at early stages of the young did not change α and β diversity indices of the gut microbes, but it increased the relative abundance of s_Clostridium_tetani and s_Clostridium_sp_MSJ_8 (significantly positively correlated with the metabolism of propionic acid) and also the concentrations of fecal metabolites that are related to stress (N-acetyl-l-aspartic acid and corticosterone) in the intestinal tract of giant pandas in adulthood. Thereby, the function of protein digestion and absorption in the intestines of captive giant pandas was decreased, and the metabolism of short-chain fatty acids was disturbed. In conclusion, the parenting experience of early maternal separation could adversely affect the stress caused by the unfavorable parenting environment in the early life of captive giant pandas related to the gut microbiota of the captive giant pandas in adulthood.

7 April 2023 in Animals
Verified
Journal Article
Open access
PDF file
ZYZheng Yan
Zheng Yan
QXQin Xu
Qin Xu
YYYing Yao
Ying Yao
JAJames Edward Ayala
James Edward Ayala
RHRong Hou
Rong Hou
HWHairui Wang
Hairui Wang
Climate change-induced food shortages pose major threats to wildlife conservation, and the exclusive reliance of giant pandas on bamboo makes them particularly vulnerable. The aim of this study was to provide insight into the reasons for the foraging strategies of giant pandas to selectively forage for different bamboo parts (bamboo shoot, culm, and leaf) during different seasons. This study used a metabolomic approach to analyze the fecal metabolites of giant pandas and conducted a correlation analysis with their gut microbiota. The results indicate that the fecal metabolites of giant pandas differ significantly depending on the bamboo parts they forage on, with higher sugar content observed when they consume bamboo culm with high fiber content. By functional annotation, culm group metabolites were enriched in the galactose metabolic pathway, while shoot group metabolites were enriched in the phenylalanine, tyrosine and tryptophan biosynthesis pathways. Moreover, Streptococcus showed a significant positive correlation with glucose and acetic acid content. Therefore, the foraging strategy of giant pandas is based on the ability to utilize the nutrient content of different bamboo parts. Captive feeding and habitat construction should enrich bamboo species to allow them to express their natural foraging strategies and improve their welfare and reproductive status.
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26 February 2021 in Animals
Verified
Journal Article
Open access
PDF file
Mingyue ZhangMingyue Zhang
Mingyue Zhang
XZXiao-Hui Zhang
Xiao-Hui Zhang
JAJames Edward Ayala
James Edward Ayala
RHRong Hou
Rong Hou
Although the ex situ conservation breeding program has basically created self-sustaining populations and genetic diversity in captive giant pandas (Ailuropoda melanoleuca)

30 September 2024 in Genes
Verified
Journal Article
Open access
PDF file
YQYicheng Qian
Yicheng Qian
YLYu-Liang Liu
Yu-Liang Liu
TWTao Wang
Tao Wang
SWShenfei Wang
Shenfei Wang
JCJiasong Chen
Jiasong Chen
KCKailai Cai
Kailai Cai
Giant pandas are an endangered species with low reproductive rates. Cryptorchidism, which can negatively affect reproduction, is also often found in pandas. Seminal plasma plays a crucial role in sperm–environment interactions, and its properties are closely linked to conception potential in both natural and assisted reproduction. The research sought to identify seminal fluid protein content variations between normal and cryptorchid giant pandas. Methods: Using a label-free MS-based method, the semen proteomes of one panda with cryptorchidism and three normal pandas were studied, and the identified proteins were compared and functionally analyzed. Results: Mass spectrometry identified 2059 seminal plasma proteins, with 361 differentially expressed proteins (DEPs). Gene ontology (GO) analysis revealed that these DEPs are mainly involved in the phosphate-containing compound metabolic, hydrolase activity, and kinase activity areas (p ≤ 0.05). The KEGG functional enrichment analysis revealed that the top 20 pathways were notably concentrated in the adipocyte lipolysis and insulin metabolism pathway, with a significance level of p ≤ 0.05. Further analysis through a protein–protein interaction (PPI) network identified nine key proteins that may play crucial roles, including D2GXH8 (hexokinase Fragment), D2HSQ6 (protein tyrosine phosphatase), and G1LHZ6 (Calmodulin 2). Conclusions: We suspect that the high abundance of D2HSQ6 in cryptorchid individuals is associated with metabolic pathways, especially the insulin signal pathway, as a typical proteomic feature related to its pathological features. These findings offer insight into the ex situ breeding conditions of this threatened species.

4 June 2026 in Animals
Verified
Journal Article
Open access
PDF file
XFXueyang Fan
Xueyang Fan
RLRuiqing Lv
Ruiqing Lv
JAJames Edward Ayala
James Edward Ayala
The endangered red panda (Ailurus fulgens) is endemic to the southeastern slopes of the Himalayas. Following the successful translocations of captive-born giant pandas in China, plans have begun to release captive-born red pandas into their habitat where the two species coincide. In order to provide baseline activity data, as part of pre-release preparation, a pair of captive-born red pandas were trained to allow the placement of GPS collars mounted with triaxial accelerometers. Ten months of Overall Dynamic Body Acceleration data were collected from the accelerometers, which showed that the pandas were primarily diurnal and had an activity rate of 42.32% (95% CI: 41.67–42.97), similar to that of wild red pandas. The animals in this study differed from wild individuals in having a distinct tri-modal diel pattern related to the captive feeding schedule. Changes in this pattern may serve as an indicator of whether a captive individual is suitable for release, and post-release resumption of the bi-modal pattern seen in wild populations may serve as an indicator of an individual’s adaptation to the wild. Though limited by the sample size, this study provides information for the management and preparation of captive red pandas for future translocations.

6 August 2025 in Pathogens
Verified
Journal Article
Open access
PDF file
CYChanjuan Yue
Chanjuan Yue
WYWanjing Yang
Wanjing Yang
GQGui-Lan Qi
Gui-Lan Qi
MYMei Yang
Mei Yang
JAJames Edward Ayala
James Edward Ayala
SLSongrui Liu
Songrui Liu
Rhabditis (Rhabditella) axei is a predominantly free-living nematode commonly found in sewage systems and decomposing organic matter. While primarily saprophytic, it has been documented as an opportunistic pathogen in human urinary and gastrointestinal tracts. The Chinese red panda (Ailurus styani), a rare and protected species in China, has not previously been reported as a host for Rhabditis (Rhabditella) spp. infections. This study reports the first documented occurrence of R. axei in red panda feces, unambiguously confirmed through integrative taxonomic approaches combining morphological and molecular analyses. The nematodes exhibited key morphological features consistent with R. axei, including a cylindrical rhabditiform esophagus, sexually dimorphic tail structures, and diagnostic spicule morphology. Molecular analysis based on 18S-ITS-28S rDNA sequencing confirmed their identity, showing >99% sequence similarity to R. axei reference strains (GenBank: PP135624.1, PP135622.1). Phylogenetic reconstruction using 18S rDNA and ITS rDNA sequences placed the isolate within a well-supported R. axei clade, clearly distinguishing it from related species such as R. blumi and R. brassicae. The findings demonstrate the ecological plasticity of R. axei as a facultative parasite capable of infecting non-traditional hosts and further highlight potential zoonotic risks associated with environmental exposure in captive wildlife populations. Our results emphasize the indispensable role of molecular diagnostics in accurately distinguishing morphologically similar nematodes within the Rhabditidae family, while providing essential baseline data for health monitoring in both in situ and ex situ conservation programs for this endangered species.