Reza Sameni

Dr. Reza Sameni

orcid

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
21 November 2016 in Physiological Measurement
Verified
Journal Article
Open access
CLChengyu Liu
Chengyu Liu
DSDavid Springer
David Springer
QLQiao Li
Qiao Li
BMBenjamin Moody
Benjamin Moody
RJRicardo Abad Juan
Ricardo Abad Juan
GCGari D. Clifford
Gari D. Clifford
In the past few decades, analysis of heart sound signals (i.e. the phonocardiogram or PCG), especially for automated heart sound segmentation and classification, has been widely studied and has been reported to have the potential value to detect pathology accurately in clinical applications. However, comparative analyses of algorithms in the literature have been hindered by the lack of high-quality, rigorously validated, and standardized open databases of heart sound recordings. This paper describes a public heart sound database, assembled for an international competition, the PhysioNet/Computing in Cardiology (CinC) Challenge 2016. The archive comprises nine different heart sound databases sourced from multiple research groups around the world. It includes 2435 heart sound recordings in total collected from 1297 healthy subjects and patients with a variety of conditions, including heart valve disease and coronary artery disease. The recordings were collected from a variety of clinical or nonclinical (such as in-home visits) environments and equipment. The length of recording varied from several seconds to several minutes. This article reports detailed information about the subjects/patients including demographics (number, age, gender), recordings (number, location, state and time length), associated synchronously recorded signals, sampling frequency and sensor type used. We also provide a brief summary of the commonly used heart sound segmentation and classification methods, including open source code provided concurrently for the Challenge. A description of the PhysioNet/CinC Challenge 2016, including the main aims, the training and test sets, the hand corrected annotations for different heart sound states, the scoring mechanism, and associated open source code are provided. In addition, several potential benefits from the public heart sound database are discussed.

19 November 2007 in IEEE Transactions on Biomedical Engineering
Verified
Journal Article
Closed access
RSReza Sameni
Reza Sameni
MSMohammad B. Shamsollahi
Mohammad B. Shamsollahi
CJChristian Jutten
Christian Jutten
GCGari D. Clifford
Gari D. Clifford
In this paper, a nonlinear Bayesian filtering framework is proposed for the filtering of single channel noisy electrocardiogram (ECG) recordings. The necessary dynamic models of the ECG are based on a modified nonlinear dynamic model, previously suggested for the generation of a highly realistic synthetic ECG. A modified version of this model is used in several Bayesian filters, including the Extended Kalman Filter, Extended Kalman Smoother, and Unscented Kalman Filter. An automatic parameter selection method is also introduced, to facilitate the adaptation of the model parameters to a vast variety of ECGs. This approach is evaluated on several normal ECGs, by artificially adding white and colored Gaussian noises to visually inspected clean ECG recordings, and studying the SNR and morphology of the filter outputs. The results of the study demonstrate superior results compared with conventional ECG denoising approaches such as bandpass filtering, adaptive filtering, and wavelet denoising, over a wide range of ECG SNRs. The method is also successfully evaluated on real nonstationary muscle artifact. This method may therefore serve as an effective framework for the model-based filtering of noisy ECG recordings.

1 January 2010 in The Open Pacing, Electrophysiology & Therapy Journal
Verified
Journal Article
Open access
PDF file
RSReza Sameni
Reza Sameni
GCGari D. Clifford
Gari D. Clifford
A Review of Fetal ECG Signal Processing Issues and Promising Directions

3 June 2022 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Open access
JOJorge Oliveira
Jorge Oliveira
Francesco RennaFrancesco Renna
Francesco Renna
PCPaulo Dias Costa
Paulo Dias Costa
MNMarcelo Nogueira
Marcelo Nogueira
COCristina Oliveira
Cristina Oliveira
MCMiguel Coimbra
Miguel Coimbra
Cardiac auscultation is one of the most cost-effective techniques used to detect and identify many heart conditions. Computer-assisted decision systems based on auscultation can support physicians in their decisions. Unfortunately, the application of such systems in clinical trials is still minimal since most of them only aim to detect the presence of extra or abnormal waves in the phonocardiogram signal, i.e., only a binary ground truth variable (normal vs abnormal) is provided. This is mainly due to the lack of large publicly available datasets, where a more detailed description of such abnormal waves (e.g., cardiac murmurs) exists. To pave the way to more effective research on healthcare recommendation systems based on auscultation, our team has prepared the currently largest pediatric heart sound dataset. A total of 5282 recordings have been collected from the four main auscultation locations of 1568 patients, in the process, 215780 heart sounds have been manually annotated. Furthermore, and for the first time, each cardiac murmur has been manually annotated by an expert annotator according to its timing, shape, pitch, grading, and quality. In addition, the auscultation locations where the murmur is present were identified as well as the auscultation location where the murmur is detected more intensively. Such detailed description for a relatively large number of heart sounds may pave the way for new machine learning algorithms with a real-world application for the detection and analysis of murmur waves for diagnostic purposes.

5 March 2008 in IEEE Transactions on Biomedical Engineering
Verified
Journal Article
Closed access
RSReza Sameni
Reza Sameni
CJChristian Jutten
Christian Jutten
MSMohammad B. Shamsollahi
Mohammad B. Shamsollahi
In this letter, we propose the application of the generalized eigenvalue decomposition for the decomposition of multichannel electrocardiogram (ECG) recordings. The proposed method uses a modified version of a previously presented measure of periodicity and a phase-wrapping of the RR-interval, for extracting the ldquomost periodicrdquo linear mixtures of a recorded dataset. It is shown that the method is an improved extension of conventional source separation techniques, specifically customized for ECG signals. The method is therefore of special interest for the decomposition and compression of multichannel ECG, and for the removal of maternal ECG artifacts from fetal ECG recordings.

16 January 2007 in EURASIP Journal on Advances in Signal Processing
Verified
Journal Article
Open access
PDF file
RSReza Sameni
Reza Sameni
GCGari D. Clifford
Gari D. Clifford
CJChristian Jutten
Christian Jutten
MSMohammad B Shamsollahi
Mohammad B Shamsollahi
A three-dimensional dynamic model of the electrical activity of the heart is presented. The model is based on the single dipole model of the heart and is later related to the body surface potentials through a linear model which accounts for the temporal movements and rotations of the cardiac dipole, together with a realistic ECG noise model. The proposed model is also generalized to maternal and fetal ECG mixtures recorded from the abdomen of pregnant women in single and multiple pregnancies. The applicability of the model for the evaluation of signal processing algorithms is illustrated using independent component analysis. Considering the difficulties and limitations of recording long-term ECG data, especially from pregnant women, the model described in this paper may serve as an effective means of simulation and analysis of a wide range of ECGs, including adults and fetuses.