Submerged plants inhibit algae through shading effects, nutrient competition, allelopathy, and combinations of these mechanisms. However, it is unclear which mechanism is dominant, and how the inhibition intensity results from the traits of the plant and algae. In this study, we performed meta-analysis to quantitatively identify the dominant mechanisms, evaluate the relationship between inhibition intensity and the species and functional traits of the submerged plants or algae, and reveal the influences of external environmental factors. We found that allelopathy caused stronger inhibition than the shading effect and nutrient competition and dominated the combined mechanisms. Although the leaf shapes of the submerged plants influenced light availability, this did not change the degree of algae suppression. Algal species, properties (toxic or nontoxic) and external environmental factors (e.g., lab/mesocosm experiments, co-/filtrate/extract culture, presence or absence of interspecific competition) potentially influenced inhibition strength. Cyanobacteria and Bacillariophyta were more strongly inhibited than Chlorophyta, and toxic Cyanobacteria more than non-toxic Cyanobacteria. Algae inhibition by submerged plants was species-dependent. Ceratophyllum, Vallisneria, and Potamogeton strongly inhibited Microcystis, and can potentially prevent or mitigate harmful algal blooms of this species. However, the most common submerged plant species inhibited mixed algae communities to some extent. The results from lab experiments and mesocosm experiments both confirmed the inhibition of algae by submerged plants, but more evidence from mesocosm experiments is needed to elucidate the inhibition mechanism in complex ecosystems. Submerged plants in co-cultures inhibited algae more strongly than in extract and filtrate cultures. Complex interspecific competition may strengthen or weaken algae inhibition, but the response of this inhibition to complex biological mechanisms needs to be further explored. Our meta-analysis provides insights into which mechanisms contributed most to the inhibition effect and a scientific basis for selecting suitable submerged plant species and controlling external conditions to prevent algal blooms in future ecological restoration of lakes.

Antibiotic resistance genes (ARGs) are a growing problem that is widespread in river-lake ecosystems, where they pose a threat to the aquatic environment's health and public safety. These systems serve as critical nodes in water management, as they facilitate the equitable allocation of water resources through long-term and frequent water diversions. However, hydrological disturbances associated with water-regulation practices can influence the dynamics of their potential host microorganisms and associated resistance genes. Consequently, identifying the key ARGs and their resistance mechanisms in heavily regulated waters is vital for safeguarding human health and that of river-lake ecosystems. In this study, we examined the impact of water-regulation factors on ARGs and their hosts within a river-lake continuum using 16S rRNA and metagenomic sequencing. We found that a significant increase in ARG abundance during regulation periods (p < 0.05), especially in the aquatic environment. Key resistance genes were macB, tetA, evgS, novA, and msbA, with increased efflux pinpointed as their principal resistance mechanism. Network analysis identified Flavobacteriales, Acinetobacter, Pseudomonas, Burkholderiaceae, and Erythrobacter as key potential host microorganisms, which showed increased abundance within the water column during regulation periods (p < 0.05). Flow velocity and water depth both drove the host microorganisms and critical ARGs. Our findings underscore the importance of monitoring and mitigating the antibiotic resistance risk during water transfers in river-lake systems, thereby supporting informed management and conservation strategies.