To investigate the effects of Bacillus coagulans on growth performance and intestinal mucosal barrier functions of juvenile channel catfish ( Ictalurus punctatus ), this study formulated two experimental diets: a control diet (CN group, without B. coagulans ) and a B. coagulans -supplemented diet (BC group, containing 1×10 8 CFU/g B. coagulans ). Each diet was assigned to three replicate tanks for an 8-week feeding trial. Compared with the CN group, the BC group exhibited a significantly lower feed conversion ratio ( P < 0.05). The BC group exhibited significantly increased activities of intestinal trypsin, α-amylase, and glutathione S-transferase ( P < 0.05), alongside significantly reduced levels of malondialdehyde and superoxide anion ( P < 0.05). Moreover, the BC group showed significantly upregulated gene expression of intestinal tight junction proteins ( zonula occludens-2 , claudin-18 , claudin-g , junctional adhesion molecule-2b , and junctional adhesion molecule-3b ; P < 0.05) and the anti-inflammatory factor ( transforming growth factor-β ; P < 0.05). Conversely, the gene expression levels of pro-inflammatory factors ( interleukin-1β , tumor necrosis factor-α , interleukin-6 , and interferon-γ1 ) were significantly downregulated ( P < 0.05). Additionally, genes associated with the intestinal chemical barrier ( mucin-4 , lysozyme-c , lysozyme-g , NK-lysin type 1 , and β-defensin ) were significantly upregulated ( P < 0.05). Intestinal microbiota analysis revealed increased relative abundance of beneficial bacteria (e.g., Firmicutes, Bacilli, Erysipelotrichales, and Turicibacter ) in the BC group ( P < 0.05). Non-targeted metabolomics further indicated significantly elevated levels of beneficial metabolites, including soyasaponin I and taurine in the BC group ( P < 0.05). In summary, dietary B. coagulans improved feed utilization, enhanced intestinal digestive and antioxidant capacity, strengthened mucosal barrier functions, optimized intestinal metabolism, and promoted intestinal health.