The passion fruit (Passiflora edulis Sims), also known as the purple granadilla, is widely cultivated as the new darling of the fruit market throughout southern China. This exotic and perennial climber is adapted to warm and humid climates, and thus is generally intolerant of cold. There is limited information about gene regulation and signaling pathways related to the cold stress response in this species. In this study, two transcriptome libraries (KEDU_AP vs. GX_AP) were constructed from the aerial parts of cold-tolerant and cold-susceptible varieties of P. edulis, respectively. Overall, 126,284,018 clean reads were obtained, and 86,880 unigenes with a mean size of 1449 bp were assembled. Of these, there were 64,067 (73.74%) unigenes with significant similarity to publicly available plant protein sequences. Expression profiles were generated, and 3045 genes were found to be significantly differentially expressed between the KEDU_AP and GX_AP libraries, including 1075 (35.3%) up-regulated and 1970 (64.7%) down-regulated. These included 36 genes in enriched pathways of plant hormone signal transduction, and 56 genes encoding putative transcription factors. Six genes involved in the ICE1–CBF–COR pathway were induced in the cold-tolerant variety, and their expression levels were further verified using quantitative real-time PCR. This report is the first to identify genes and signaling pathways involved in cold tolerance using high-throughput transcriptome sequencing in P. edulis. These findings may provide useful insights into the molecular mechanisms regulating cold tolerance and genetic breeding in Passiflora spp.

A comprehensive genetic diversity analysis of 87 Passiflora germplasm accessions domesticated and cultivated for several years in the karst region of Guizhou, China, was conducted utilizing simple sequence repeat (SSR) fluorescent markers. These Passiflora species, renowned for their culinary and medicinal value, could bring significant economic and ecological benefits to the region. This study aimed to assess the genetic resources of these species and facilitate the selection of superior cultivars adapted to the karst environment. Our analysis revealed an abundance of SSR loci within the Passiflora transcriptome, with single-base repeats being the most prevalent type. Through rigorous primer screening and amplification, we successfully identified 27 SSR primer pairs exhibiting robust polymorphisms. Further interrogation at eight microsatellite loci revealed 68 alleles, underscoring the high level of genetic diversity present in the cultivated accessions. The average expected heterozygosity was 0.202, with the ssr18 locus exhibiting the highest value of 0.768, indicating significant genetic variation. The mean polymorphic information content (PIC) of 0.657 indicates the informativeness of these SSR markers. Comparative analyses of the cultivated and potential wild progenitors revealed distinct genetic variations among the different Passiflora types. Genetic structure and clustering analyses of the 87 accessions revealed seven distinct groups, suggesting gene flow and similarities among the resources. Notably, a DNA fingerprinting system was established using eight SSR primer pairs, effectively distinguishing the selected cultivars that had adapted to the karst mountainous region. This study not only deepens our understanding of Passiflora genetic resources in the karst environment but also provides a valuable reference for conservation, genetic improvement, and cultivar selection. The rich genetic diversity of the Passiflora germplasm underscores their potential for sustainable utilization in breeding programs aimed at enhancing the economic and ecological viability of these valuable plant species.

Soil organic carbon (SOC) forms the largest terrestrial organic carbon (C) pool, which is regulated by complex connections between exogenous C input, microbial activity, and SOC conversion. Few studies have examined the changes in natural abundance C due to microbial activity after exogenous C inputs in karst lime soils in China. In this research, the ¹³C isotope tracer technique was employed to investigate the priming effect of SOC on typical lime soil (0~20 cm) of ¹³C_litter and ¹³C_calcium carbonate (CaCO₃) through a mineralization incubation experiment. Samples were collected at 5, 10, 20, 40, 60, and 80 days of incubation and analyzed for SOC mineralization, SOC distribution across fractions (>250 μm, 53~250 μm, and 250 μm) and microaggregate (53~250 μm) C fractions by 2150.13, 2229.06, and 1575.06 mg C kg⁻¹ C_bulk on average and increased the mineral particulate C fraction (<53 μm) by 1653.98 mg C kg⁻¹ C_bulk. As the incubation time extended, a significantly positive correlation was apparent between SOC priming and soil fungal diversity, as well as between the mineral particulate C fraction and soil bacterial diversity. The effect of soil fungal diversity on SOC priming (R = 0.40, p = 0.003) significantly exceeded that of bacterial diversity on SOC sequestration (R = 0.27, p = 0.02). Our results reveal that after adding litter or CaCO₃, soil fungi stimulate SOC mineralization and decomposition and soil bacteria enhance SOC sequestration, with the effects of fungi being more pronounced. These findings can provide a theoretical basis for understanding C sequestration and emission reduction in karst lime soils.