Project Psyche is a transnational initiative to generate and study chromosome-level reference genomes of all ~11 000 species of Lepidoptera (butterflies and moths) found in Europe. Here, we describe the decentralised network of collection and sequencing hubs that has enabled rapid progress, the standardised protocols for sampling and sequencing, and the collaborative framework for data analysis. With over 1000 species already sequenced, Lepidoptera are at the forefront of biodiversity genomics with the most reference genomes of any eukaryotic order. The completed pan-European catalogue of openly accessible lepidopteran genomes will transform our understanding of evolution and ecology, inform conservation, and foster advances in management of pests and invasive species. We highlight research areas that will benefit from this large-scale genome dataset.

The Black-veined WhiteAporia crataegi(Linnaeus, 1758), a common and widespread butterfly ranging from northwestern Africa to Europe and Asia, has been extinct in Britain since the 1920s and is on a steady decline in several other parts of its range. In order to investigate genetic diversity withinA. crataegiand its correspondence with current subspecies-level taxonomy, we barcoded 173 specimens from across its range including, for the first time, extinct populations from Britain and Korea. Using next generation sequencing we also obtained a sequence forAporia joubini, a peculiar taxon from China known only by its type specimen collected in the early twentieth century. Our phylogenetic analysis placedA. joubinisister toA. oberthuri, although further taxon sampling may reveal a different scheme. WithinA. crataegi, we observed a shallow and weak mitogenomic structure with only a few distinct lineages in North Africa, Sicily, Iran, and Japan. Eurasian populations, including those extinct in Britain and Korea, clustered into a large set of closely allied lineages, consistent with a recent expansion during the Late Pleistocene glacial period. This study highlights the importance of museum collections and the unique opportunities they provide in documenting species diversity and helping conservation efforts.

In this study, phylogenetic and biogeographic methods are used to investigate the evolutionary relationships between various types of Italian pasta ripiena (filled pasta) and related representatives from across Eurasia, using information from their geography, shape, content and cooking methods. Our results showed that, with the exception of the Sardinian Culurgiones, all the other pasta ripiena from Italy likely had a single origin in the northern parts of the country. Based on the proposed evolutionary hypothesis, the Italian pasta are divided into two main clades: a ravioli clade mainly characterized by a more or less flat shape, and a tortellini clade mainly characterized by a three-dimensional shape. The implications of these findings are further discussed.

Even though the high plateaus of Qinghai-Tibet and Iran share many faunal elements, the historical biogeography of the species present in this area are not very well understood. We present a complete COI barcode library for Aporia Hübner and a first comprehensive phylogeny for the genus including all known species and majority of subspecies using ten available genes (COI-COII, ND1, ND5, Cytb, EF-1a, Wg, 16S, 28S-D2/D3 and 28S-D8). We then focus on A. leucodice (Eversmann, 1843) and related taxa in order to resolve some long-standing taxonomic issues in this species-group. Based on DNA sequence data as well as morphology, we raise Aporia illumina (Grum-Grshimailo 1890) stat. nov. (= pseudoillumina Tshikolovets 2021 syn. nov.) as a distinct species and designate a lectotype; synonymize Aporia leucodice leucodice Eversmann, 1843 (= A. l. morosevitshae Sheljuzhko, 1908 syn. nov.); and describe a new species, Aporia ahura sp. nov., from the Central Alborz Mountains in northern Iran.

We investigated the evolutionary history of the threatened southern swallowtail butterfly (Papilio alexanor) using DNA sequences from COI barcodes, in addition to two nuclear genes (EF-1a and wingless) for a subset of the samples and outgroups to strengthen the backbone of the phylogeny. Our results align with previous hypotheses on the origin of this species in the eastern Palaearctic and clarify its current systematics by delineating five subspecies-level clades. Accordingly, we reinstate P. alexanor ssp. voldemar stat. rev. as a valid subspecies. Our phylogeographical analysis shows that P. alexanor is likely to have originated in Central Asia in the Eocene and began diversification and dispersal towards the west in the Early Miocene, arriving in Europe ∼9 Mya. Results of our species distribution modelling analysis suggest that although suitable habitats for P. alexanor will be likely to persist in the eastern parts of its distribution range, the species will be extinct in 89% of its potential suitable habitat by 2070 owing to environmental changes. We show that a combination of molecular phylogenetics and species distribution modelling can be used to reconstruct the evolutionary history and simultaneously predict the persistence of a species into the future. Our results also underline the high sensitivity of species with restricted distributions in times of rapid climate change, which might even drive such taxa towards global extinction.

Calinaga (Moore 1857) is a rare and enigmatic Asian butterfly genus whose phylogenetic placement within Nymphalidae has only recently been established. The evolutionary history of Calinaga species however remains unknown. Here we explore the phylogeography of Calinaga using 1310 bp of sequence data from two molecular (mtDNA barcode and ribosomal protein S5 nuclear gene) and two morphological traits (genitalia and wing pattern). Within the proposed phylogenetic framework, we estimate the ages of divergence within the genus and reconstruct their historical biogeography. We found strong support for monophyly of Calinaga and support for the most recent accepted species in the genus. Our results indicate that the common ancestor of Calinaga first split in the Eocene (~43 million years ago) in southern China, probably as a consequence of geological and environmental impacts of the collision of the Indian and Asian subcontinents. In the Oligocene/Miocene, the extrusion of Indochina from the continent caused further dramatic orogenetic changes that promoted isolation and speciation events within the genus while Pleistocene climatic changes also influenced the distribution and further speciation. A dispersal–vicariance analysis suggests that vicariance events have played a far more important role than dispersal in the distribution of extant species.