Jakub Chojnacki

Dr. Jakub Chojnacki

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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 October 2012 in Science
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Journal Article
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JCJakub Chojnacki
Jakub Chojnacki
TSThorsten Staudt
Thorsten Staudt
BGBärbel Glass
Bärbel Glass
PBPit Bingen
Pit Bingen
JEJohann Engelhardt
Johann Engelhardt
HKHans-Georg Krausslich
Hans-Georg Krausslich
Switching on HIV: Newly assembled human immunodeficiency virus (HIV) virions bud from the host cell as immature particles. Proteolysis of the Gag protein, which forms a structural lattice below the viral membrane, leads to the formation of mature infectious HIV. Fusion of mature HIV virions with a target cell is mediated by viral envelope (Env) proteins that occur in trimeric “spikes” on the surface of the virion. Chojnacki et al. (p. 524 ) used subdiffraction microscopy to show that the spikes were dispersed on the immature virion but clustered into a single focus on the mature virion. The clustering was important for infectivity. Coupling Gag proteolysis with clustering may ensure that only particles whose interior has switched to the entry mode are competent for membrane fusion.

15 September 2017 in Nature Communications
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Journal Article
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JCJakub Chojnacki
Jakub Chojnacki
DWDominic Waithe
Dominic Waithe
PCPablo Carravilla
Pablo Carravilla
NHNerea Huarte
Nerea Huarte
SGSilvia Galiani
Silvia Galiani
Christian EggelingChristian Eggeling
Christian Eggeling
Human immunodeficiency virus type 1 (HIV-1) assembles as immature particles, which require the proteolytic cleavage of structural polyprotein Gag and the clustering of envelope glycoprotein Env for infectivity. The details of mechanisms underlying Env clustering remain unknown. Here, we determine molecular dynamics of Env on the surface of individual HIV-1 particles using scanning fluorescence correlation spectroscopy on a super-resolution STED microscope. We find that Env undergoes a maturation-induced increase in mobility, highlighting diffusion as one cause for Env clustering. This mobility increase is dependent on Gag-interacting Env tail but not on changes in viral envelope lipid order. Diffusion of Env and other envelope incorporated proteins in mature HIV-1 is two orders of magnitude slower than in the plasma membrane, indicating that HIV-1 envelope is intrinsically a low mobility environment, mainly due to its general high lipid order. Our results provide insights into dynamic properties of proteins on the surface of individual virus particles.

27 July 2015 in Nature Methods
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JSJale Schneider
Jale Schneider
JZJasmin Zahn
Jasmin Zahn
MMMarta Maglione
Marta Maglione
SSStephan J Sigrist
Stephan J Sigrist
JMJonas Marquard
Jonas Marquard
SHStefan W Hell
Stefan W Hell

11 October 2019 in Science Advances
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Journal Article
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CFCyril Favard
Cyril Favard
JCJakub Chojnacki
Jakub Chojnacki
PMP. Merida
P. Merida
NYNaresh Yandrapalli
Naresh Yandrapalli
JMJohnson Mak
Johnson Mak
DMDelphine Muriaux
Delphine Muriaux
HIV-1 Gag protein assembles at the plasma membrane of infected cells for viral particle formation. Gag targets lipids, mainly PI(4,5)P2, at the inner leaflet of this membrane. Here, we address the question whether Gag is able to trap specifically PI(4,5)P2 or other lipids during HIV-1 assembly in the host CD4+ T lymphocytes. Lipid dynamics within and away from HIV-1 assembly sites were determined using super-resolution microscopy coupled with scanning fluorescence correlation spectroscopy in living cells. Analysis of HIV-1–infected cells revealed that, upon assembly, HIV-1 is able to specifically trap PI(4,5)P2 and cholesterol, but not phosphatidylethanolamine or sphingomyelin. Furthermore, our data showed that Gag is the main driving force to restrict the mobility of PI(4,5)P2 and cholesterol at the cell plasma membrane. This is the first direct evidence highlighting that HIV-1 creates its own specific lipid environment by selectively recruiting PI(4,5)P2 and cholesterol as a membrane nanoplatform for virus assembly.

2 June 2020 in Nature Communications
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HTHaruka Toda
Haruka Toda
MDMiriam Diaz-Varela
Miriam Diaz-Varela
JSJoan Segui-Barber
Joan Segui-Barber
WRWanlapa Roobsoong
Wanlapa Roobsoong
BBBarbara Baro
Barbara Baro
HPHernando Del Portillo
Hernando Del Portillo
Plasmodium vivax is the most widely distributed human malaria parasite. Previous studies have shown that circulating microparticles during P. vivax acute attacks are indirectly associated with severity. Extracellular vesicles (EVs) are therefore major components of circulating plasma holding insights into pathological processes. Here, we demonstrate that plasma-derived EVs from Plasmodium vivax patients (PvEVs) are preferentially uptaken by human spleen fibroblasts (hSFs) as compared to the uptake of EVs from healthy individuals. Moreover, this uptake induces specific upregulation of ICAM-1 associated with the translocation of NF-kB to the nucleus. After this uptake, P. vivax-infected reticulocytes obtained from patients show specific adhesion properties to hSFs, reversed by inhibiting NF-kB translocation to the nucleus. Together, these data provide physiological EV-based insights into the mechanisms of human malaria pathology and support the existence of P. vivax-adherent parasite subpopulations in the microvasculature of the human spleen.

1 February 2017 in Cell Reports
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Journal Article
Open access
RRRebecca A. Russell
Rebecca A. Russell
JCJakub Chojnacki
Jakub Chojnacki
DJDaniel M. Jones
Daniel M. Jones
EJErrin Johnson
Errin Johnson
TDThao Do
Thao Do
QSQuentin Sattentau
Quentin Sattentau
HIV-1 disseminates to diverse tissues and establishes long-lived viral reservoirs. These reservoirs include the CNS, in which macrophage-lineage cells, and as suggested by many studies, astrocytes, may be infected. Here, we have investigated astrocyte infection by HIV-1. We confirm that astrocytes trap and internalize HIV-1 particles for subsequent release but find no evidence that these particles infect the cell. Astrocyte infection was not observed by cell-free or cell-to-cell routes using diverse approaches, including luciferase and GFP reporter viruses, fixed and live-cell fusion assays, multispectral flow cytometry, and super-resolution imaging. By contrast, we observed intimate interactions between HIV-1-infected macrophages and astrocytes leading to signals that might be mistaken for astrocyte infection using less stringent approaches. These results have implications for HIV-1 infection of the CNS, viral reservoir formation, and antiretroviral therapy.