Sebastien Calvignac-Spencer

Dr. Sebastien Calvignac-Spencer

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 December 2014 in EMBO Molecular Medicine
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Journal Article
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ASAlmudena Marí Saéz
Almudena Marí Saéz
SWSabrina Weiss
Sabrina Weiss
KNKathrin Nowak
Kathrin Nowak
VLVincent Lapeyre
Vincent Lapeyre
FZFee Zimmermann
Fee Zimmermann
FLFabian H. Leendertz
Fabian H. Leendertz
The severe Ebola virus disease epidemic occurring in West Africa stems from a single zoonotic transmission event to a 2‐year‐old boy in Meliandou, Guinea. We investigated the zoonotic origins of the epidemic using wildlife surveys, interviews, and molecular analyses of bat and environmental samples. We found no evidence for a concurrent outbreak in larger wildlife. Exposure to fruit bats is common in the region, but the index case may have been infected by playing in a hollow tree housing a colony of insectivorous free‐tailed bats ( Mops condylurus ). Bats in this family have previously been discussed as potential sources for Ebola virus outbreaks, and experimental data have shown that this species can survive experimental infection. These analyses expand the range of possible Ebola virus sources to include insectivorous bats and reiterate the importance of broader sampling efforts for understanding Ebola virus ecology.

15 September 2021 in Nature
Verified
Journal Article
Closed access
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AKAlpha Keita
Alpha Keita
FKFara R Koundouno
Fara R Koundouno
MFMartin Faye
Martin Faye
ADAriane Düx
Ariane Düx
JHJulia Hinzmann
Julia Hinzmann
NMN' Faly Magassouba
N' Faly Magassouba

1 May 2011 in Journal of Virology
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Journal Article
Closed access
NSNelly Scuda
Nelly Scuda
JHJörg Hofmann
Jörg Hofmann
SCSebastien Calvignac-Spencer
Sebastien Calvignac-Spencer
KRKlemens Ruprecht
Klemens Ruprecht
PLPeter Liman
Peter Liman
BEBernhard Ehlers
Bernhard Ehlers
We identified a novel human polyomavirus from a kidney transplant patient under immunosuppressive treatment, by use of a generic PCR. The genome of the virus was completely amplified and sequenced. In phylogenetic analyses, it appeared as the closest relative to the African green monkey-derived lymphotropic polyomavirus (LPV). Further investigation of clinical samples from immunocompromised patients with specific nested PCR revealed additional positive samples, indicating that the virus naturally infects humans. The virus was tentatively named human polyomavirus 9 (HPyV9). The previously observed seroreactivity to LPV in human populations might find a partial explanation in the circulation of HPyV9.

22 October 2021 in Science
Verified
Journal Article
Open access
EWEduan Wilkinson
Eduan Wilkinson
Marta GiovanettiMarta Giovanetti
Marta Giovanetti
HTHouriiyah Tegally
Houriiyah Tegally
JSJames Emmanuel San
James Emmanuel San
RLRichard Lessells
Richard Lessells
TOTulio De Oliveira
Tulio De Oliveira
SARS-CoV-2 across Africa: The impact of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has been hard to track in African countries, largely because of patchy data. Wilkinson et al . curated viral genomes collected in 2021 from several countries across the continent. Outbreaks during 2020 in each African country were initiated by imported cases, mostly from Europe. As the pandemic developed, case numbers in African countries were likely many times higher than reported, and subsequent waves of the pandemic appear to have been more severe. Consequently, high-transmission variants have emerged that have spread within the continent, and African countries must be included in global control efforts. —CA

8 January 2013 in Molecular Ecology
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Journal Article
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SCSebastien Calvignac-Spencer
Sebastien Calvignac-Spencer
KMKevin Merkel
Kevin Merkel
NKNadine Kutzner
Nadine Kutzner
HKHjalmar Kühl
Hjalmar Kühl
CBChristophe Boesch
Christophe Boesch
FLFabian H. Leendertz
Fabian H. Leendertz

22 June 2017 in Nature Ecology & Evolution
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Journal Article
Open access
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ABAlex Bush
Alex Bush
RSRahel Sollmann
Rahel Sollmann
AWAndreas Wilting
Andreas Wilting
KBKristine Bohmann
Kristine Bohmann
BCBeth Cole
Beth Cole
DYDouglas W. Yu
Douglas W. Yu
Understandably, given the fast pace of biodiversity loss, there is much interest in using Earth observation technology to track biodiversity, ecosystem functions and ecosystem services. However, because most biodiversity is invisible to Earth observation, indicators based on Earth observation could be misleading and reduce the effectiveness of nature conservation and even unintentionally decrease conservation effort. We describe an approach that combines automated recording devices, high-throughput DNA sequencing and modern ecological modelling to extract much more of the information available in Earth observation data. This approach is achievable now, offering efficient and near-real-time monitoring of management impacts on biodiversity and its functions and services.