Dan Jones

Dan Jones

Biomedical Sciences, University of Wisconsin–Milwaukee, Milwaukee, Wisconsin, USA
orcid

Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 May 2023 in International Journal of Antimicrobial Agents
Verified
Journal Article
Open access
Dan JonesDan Jones
Dan Jones
ELEmily Lou LaMartina
Emily Lou LaMartina
JLJenna Rachel Lewis
Jenna Rachel Lewis
ADAndrew James Dahl
Andrew James Dahl
NNNischala Nadig
Nischala Nadig
Troy SkworTroy Skwor
Troy Skwor
Antimicrobial resistance (AMR) is one of the most pressing public health concerns; therefore, it is imperative to advance our understanding of the factors influencing AMR from Global and One Health perspectives. To address this, Aeromonas populations were identified using 16S rRNA gene libraries among human, agriculture, aquaculture, drinking water, surface water, and wastewater samples, supporting its use as indicator bacteria to study AMR. A systematic review and meta-analysis was then performed from Global and One Health perspectives, including data from 221 articles describing 15 891 isolates from 57 countries. The interconnectedness of different environments was evident as minimal differences were identified between sectors among 21 different antimicrobials. However, resistance to critically important antibiotics (aztreonam and cefepime) was significantly higher among wastewater populations compared with clinical isolates. Additionally, isolates from untreated wastewater typically exhibited increased AMR compared with those from treated wastewater. Furthermore, aquaculture was associated with increased AMR to ciprofloxacin and tetracycline compared with wild-caught seafood. Using the World Health Organization AWaRe classifications, countries with lower consumption of "Access" compared to "Watch" drugs from 2000 to 2015 demonstrated higher AMR levels. The current analysis revealed negative correlations between AMR and anthropogenic factors, such as environmental performance indices and socioeconomic standing. Environmental health and sanitation were two of the environmental factors most strongly correlated with AMR. The current analysis highlights the negative impacts of "Watch" drug overconsumption, anthropogenic activity, absence of wastewater infrastructure, and aquaculture on AMR, thus stressing the need for proper infrastructure and global regulations to combat this growing problem.

29 February 2024 in Microorganisms
Verified
Journal Article
Open access
PDF file
Troy SkworTroy Skwor
Troy Skwor
Dan JonesDan Jones
Dan Jones
CCCaitlin Cahak
Caitlin Cahak
RNRyan J. Newton
Ryan J. Newton
Antibiotic resistance remains one of the most pressing public health issues facing the world today. At the forefront of this battle lies the ever-increasing identification of extended-spectrum beta-lactamases and carbapenemases within human pathogens, conferring resistance towards broad-spectrum and last-resort antimicrobials. This study was prompted due to the identification of a pathogenic Aeromonas hydrophila isolate (strain MAH-4) collected from abdominal fluid, which presented a robust resistance pattern against second-, third-, and fourth-generation cephalosporins, ertapenem, ciprofloxacin, gentamicin, levofloxacin and moxifloxacin, and beta lactam/beta-lactamase inhibitor combinations. Whole genome sequencing was performed and identified a 328 kb plasmid (pMAH4) encoding 10 antibiotic resistance genes, including blaSFO-1, blaTEM-1, and blaOXA-1 of A. hydrophia MAH-4. This is the first report of beta-lactamase SFO-1 within a clinical strain of Aeromonas. Due to the remarkable sequence identity of pMAH4 to plasmids associated with Enterobacterales genera like Klebsiella and the extensive capabilities of Aeromonas for horizontal gene transfer, our identification of a clinical isolate encoding SFO-1 on a plasmid suggests antibiotic resistance gene mobility between Enterobacterales and non-Enterobacterales species.

6 February 2026 in Data in Brief
Verified
Journal Article
Open access
Dan JonesDan Jones
Dan Jones
PAPraful Aggarwal
Praful Aggarwal
JTJamison Trewyn
Jamison Trewyn
PSPoojhaa Shanmugam
Poojhaa Shanmugam
KLKyle Leistikow
Kyle Leistikow
Troy SkworTroy Skwor
Troy Skwor
While investigating foodstuffs for ESBL-producing Aeromonas species on ampicillin dextrin agar with vancomycin and cefotaxime, a multidrug-resistant Empedobacter brevis strain GBW-1 was identified from ground beef. Phylogenetic analysis supports the interconnectedness of environment, humans and food driving this species' evolutionary development. Antimicrobial susceptibility testing demonstrated resistance to gentamicin, carbapenems and third-generation cephalosporins. Data collection from whole genome sequencing of this strain detected a 3.74 Mb genome with 32.8% GC content containing 3780 coding genes. Among these genes, at least three known antimicrobial resistance (AMR) genes were identified from the dataset with qacG, vanT gene within the vanG cluster, and a novel variant of the metallo-β-lactamase blaEBR-6. This homologue, EBR-6, was compared against previously known EBR variants and was found to be closest to EBR-3 with an 84.98% amino acid identity match. Data collection from in silico molecular docking experiments predicted these mutations change the binding to meropenem. Furthermore, nearly 100 annotated regions associated with mobile genetic elements, including the presence of tra operons, were identified on the genome. Together, this dataset provides, genomic, phenotypic, and in silico data that may be reused to monitor the evolution of EBR from a One Health perspective.