Jiankai Shi

Jiankai Shi


Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 July 2024 in BMC Medical Imaging
Verified
Journal Article
Open access
PDF file
QYQian Yang
Qian Yang
CWChengfeng Wang
Chengfeng Wang
KPKaicheng Pan
Kaicheng Pan
BXBing Xia
Bing Xia
RXRuifei Xie
Ruifei Xie
JSJiankai Shi
Jiankai Shi
Objective: Accurate delineation of the hippocampal region via magnetic resonance imaging (MRI) is crucial for the prevention and early diagnosis of neurosystemic diseases. Determining how to accurately and quickly delineate the hippocampus from MRI results has become a serious issue. In this study, a pixel-level semantic segmentation method using 3D-UNet is proposed to realize the automatic segmentation of the brain hippocampus from MRI results. Methods: Two hundred three-dimensional T1-weighted (3D-T1) nongadolinium contrast-enhanced magnetic resonance (MR) images were acquired at Hangzhou Cancer Hospital from June 2020 to December 2022. These samples were divided into two groups, containing 175 and 25 samples. In the first group, 145 cases were used to train the hippocampus segmentation model, and the remaining 30 cases were used to fine-tune the hyperparameters of the model. Images for twenty-five patients in the second group were used as the test set to evaluate the performance of the model. The training set of images was processed via rotation, scaling, grey value augmentation and transformation with a smooth dense deformation field for both image data and ground truth labels. A filling technique was introduced into the segmentation network to establish the hippocampus segmentation model. In addition, the performance of models established with the original network, such as VNet, SegResNet, UNetR and 3D-UNet, was compared with that of models constructed by combining the filling technique with the original segmentation network. Results: The results showed that the performance of the segmentation model improved after the filling technique was introduced. Specifically, when the filling technique was introduced into VNet, SegResNet, 3D-UNet and UNetR, the segmentation performance of the models trained with an input image size of 48 × 48 × 48 improved. Among them, the 3D-UNet-based model with the filling technique achieved the best performance, with a Dice score (Dice score) of 0.7989 ± 0.0398 and a mean intersection over union (mIoU) of 0.6669 ± 0.0540, which were greater than those of the original 3D-UNet-based model. In addition, the oversegmentation ratio (OSR), average surface distance (ASD) and Hausdorff distance (HD) were 0.0666 ± 0.0351, 0.5733 ± 0.1018 and 5.1235 ± 1.4397, respectively, which were better than those of the other models. In addition, when the size of the input image was set to 48 × 48 × 48, 64 × 64 × 64 and 96 × 96 × 96, the model performance gradually improved, and the Dice scores of the proposed model reached 0.7989 ± 0.0398, 0.8371 ± 0.0254 and 0.8674 ± 0.0257, respectively. In addition, the mIoUs reached 0.6669 ± 0.0540, 0.7207 ± 0.0370 and 0.7668 ± 0.0392, respectively. Conclusion: The proposed hippocampus segmentation model constructed by introducing the filling technique into a segmentation network performed better than models built solely on the original network and can improve the efficiency of diagnostic analysis.

11 October 2024 in Sensors
Verified
Journal Article
Open access
PDF file
LXLei Xu
Lei Xu
YLYane Li
Yane Li
XWXiang Weng
Xiang Weng
JSJiankai Shi
Jiankai Shi
HFHailin Feng
Hailin Feng
GZGuoxin Zhou
Guoxin Zhou
Mildew infestation is a significant cause of loss during grain storage. The growth and metabolism of mildew leads to changes in gas composition and temperature within granaries. Recent advances in sensor technology and machine learning enable the prediction of grain mildew during storage. Current research primarily focuses on predicting mildew occurrence or grading using simple machine learning methods, without in-depth exploration of the time series characteristics of mildew process data. A monitoring device was designed and developed to capture high-quality microenvironment parameters and image data during a simulated mildew process experiment. Using the “Yongyou 15” rice varieties from Zhejiang Province, five simulation experiments were conducted under varying temperature and humidity conditions between January and May 2023. Mildew grades were defined through manual analysis to construct a multimodal dataset for the rice mildew process. This study proposes a combined model (CNN–LSTM–A) that integrates convolutional neural networks (CNN), long short-term memory (LSTM) networks, and attention mechanisms to predict the mildew grade of stored rice. The proposed model was compared with LSTM, CNN–LSTM, and LSTM–Attention models. The results indicate that the proposed model outperforms the others, achieving a prediction accuracy of 98%. The model demonstrates superior accuracy and more stable performance. The generalization performance of the prediction model was evaluated using four experimental datasets with varying storage temperature and humidity conditions. The results show that the model achieves optimal prediction stability when the training set contains similar storage temperatures, with prediction accuracy exceeding 99.8%. This indicates that the model can effectively predict the mildew grades in rice under varying environmental conditions, demonstrating significant potential for grain mildew prediction and early warning systems.