Sampsa  Matikainen

Dr. Sampsa Matikainen


Research Focus & Metrics

Academic Career Length

33Years (1994-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 June 2020 in The Journal of Immunology
Verified
Journal Article
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SMSampsa Matikainen
Sampsa Matikainen
TNTuula Anneli Nyman
Tuula Anneli Nyman
WCWojciech Cypryk
Wojciech Cypryk
Inflammasomes are multiprotein complexes of the innate immune system that orchestrate development of inflammation by activating the secretion of proinflammatory cytokines, IL-1β and IL-18. The LPS of Gram-negative bacteria have been shown to activate a novel, noncanonical inflammasome by directly binding in the cytosol to human caspase-4 and mouse caspase-11. Activation of noncanonical inflammasome exerts two major effects: it activates the NLRP3–caspase-1–mediated processing and secretion of IL-1β and IL-18 and induces the inflammatory cell death, pyroptosis, via gasdermin D. This previously unexpected cytosolic LPS sensing of the innate immune system provides critical hints for host response to Gram-negative bacterial infections and development of different inflammatory diseases. However, many of its molecular regulatory mechanisms are yet to be discovered. In this review, we provide comprehensive analysis of current understanding of intracellular LPS detection and pyroptosis via noncanonical inflammasome and discuss the recently proposed mechanisms of its function and regulation.

15 November 2016 in Journal of Proteome Research
Verified
Journal Article
Closed access
WCWojciech Cypryk
Wojciech Cypryk
MLMartina Lorey
Martina Lorey
APAnne Puustinen
Anne Puustinen
TNTuula Anneli Nyman
Tuula Anneli Nyman
SMSampsa Matikainen
Sampsa Matikainen

15 October 2016 in The Journal of Immunology
Verified
Journal Article
Closed access
PDF file
EVElina Välimäki
Elina Välimäki
WCWojciech Cypryk
Wojciech Cypryk
JVJuhani Virkanen
Juhani Virkanen
KNKatariina Nurmi
Katariina Nurmi
PTPauli M. Turunen
Pauli M. Turunen
SMSampsa Matikainen
Sampsa Matikainen
Extracellular ATP is an endogenous danger signal that is known to activate inflammatory responses in innate immune cells, including macrophages. Activated macrophages start to secrete proteins to induce an immune response, as well as to recruit other immune cells to the site of infection and tissue damage. In this study, we characterized the secretome (i.e., the global pattern of secreted proteins) of ATP-stimulated human macrophages. We show that ATP stimulation activates robust vesicle-mediated unconventional protein secretion, including exosome release and membrane shedding, from human macrophages. Pathway analysis of the identified secreted proteins showed that calpain-related pathways were overrepresented in the secretome of ATP-stimulated cells. In accordance with this, calpains, which are calcium-dependent nonlysosomal cysteine proteases, were activated upon ATP stimulation through a P2X purinoceptor 7 receptor–dependent pathway. Functional studies demonstrated that calpain activity is essential for the P2X purinoceptor 7 receptor–mediated activation of unconventional protein secretion. Unconventional protein secretion was followed by cell necrosis and NLRP3 inflammasome–mediated secretion of the mature form of the proinflammatory cytokine IL-1β. Furthermore, ATP-driven NLRP3 inflammasome activation was also dependent on calpain activity. Interestingly, pro–IL-1β and inflammasome components ASC and caspase-1 were released by ATP-activated macrophages through a vesicle-mediated secretion pathway. In conclusion, to our knowledge, we provide the first global characterization of proteins secreted by ATP-activated human macrophages and show a pivotal role for calpains in the activation of the inflammatory response during ATP exposure.

25 September 2017 in Viruses
Verified
Journal Article
Open access
PDF file
DBDaria Bulanova
Daria Bulanova
AIAleksandr Ianevski
Aleksandr Ianevski
ABAndrii Bugai
Andrii Bugai
YAYevhen Akimov
Yevhen Akimov
SKSuvi Kuivanen
Suvi Kuivanen
Denis KainovDenis Kainov
Denis Kainov
Viral diseases remain serious threats to public health because of the shortage of effective means of control. To combat the surge of viral diseases, new treatments are urgently needed. Here we show that small-molecules, which inhibit cellular anti-apoptotic Bcl-2 proteins (Bcl-2i), induced the premature death of cells infected with different RNA or DNA viruses, whereas, at the same concentrations, no toxicity was observed in mock-infected cells. Moreover, these compounds limited viral replication and spread. Surprisingly, Bcl-2i also induced the premature apoptosis of cells transfected with viral RNA or plasmid DNA but not of mock-transfected cells. These results suggest that Bcl-2i sensitizes cells containing foreign RNA or DNA to apoptosis. A comparison of the toxicity, antiviral activity, and side effects of six Bcl-2i allowed us to select A-1155463 as an antiviral lead candidate. Thus, our results pave the way for the further development of Bcl-2i for the prevention and treatment of viral diseases.

1 November 2016 in Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
Verified
Journal Article
Closed access
MAMaria Anastasina
Maria Anastasina
NMNicolas Le May
Nicolas Le May
ABAndrii Bugai
Andrii Bugai
YFYu Fu
Yu Fu
SSSandra Söderholm
Sandra Söderholm
Denis KainovDenis Kainov
Denis Kainov

29 September 2016 in Viruses
Verified
Journal Article
Open access
PDF file
SSSandra Söderholm
Sandra Söderholm
YFYu Fu
Yu Fu
LGLana Gaelings
Lana Gaelings
SBSergei Belanov
Sergei Belanov
LYLaxman Yetukur
Laxman Yetukur
Denis KainovDenis Kainov
Denis Kainov
Human influenza A viruses (IAVs) cause global pandemics and epidemics. These viruses evolve rapidly, making current treatment options ineffective. To identify novel modulators of IAV–host interactions, we re-analyzed our recent transcriptomics, metabolomics, proteomics, phosphoproteomics, and genomics/virtual ligand screening data. We identified 713 potential modulators targeting 199 cellular and two viral proteins. Anti-influenza activity for 48 of them has been reported previously, whereas the antiviral efficacy of the 665 remains unknown. Studying anti-influenza efficacy and immuno/neuro-modulating properties of these compounds and their combinations as well as potential viral and host resistance to them may lead to the discovery of novel modulators of IAV–host interactions, which might be more effective than the currently available anti-influenza therapeutics.