Tjitse Van der Molen

Mr. Tjitse Van der Molen

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 January 2019 in The Plant Cell
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Journal Article
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Jieyu LiuJieyu Liu
Jieyu Liu
LRLuuk Rutten
Luuk Rutten
ELErik Limpens
Erik Limpens
TMTjitse Van der Molen
Tjitse Van der Molen
RVRobin Van Velzen
Robin Van Velzen
TBTon Bisseling
Ton Bisseling
The legume-rhizobium symbiosis results in nitrogen-fixing root nodules, and their formation involves both intracellular infection initiated in the epidermis and nodule organogenesis initiated in inner root cell layers. NODULE INCEPTION (NIN) is a nodule-specific transcription factor essential for both processes. These NIN-regulated processes occur at different times and locations in the root, demonstrating a complex pattern of spatiotemporal regulation. We show that regulatory sequences sufficient for the epidermal infection process are located within a 5 kb region directly upstream of the NIN start codon in Medicago truncatula. Furthermore, we identify a remote upstream cis-regulatory region required for the expression of NIN in the pericycle, and we show that this region is essential for nodule organogenesis. This region contains putative cytokinin response elements and is conserved in eight more legume species. Both the cytokinin receptor 1, which is essential for nodule primordium formation, and the B-type response regulator RR1 are expressed in the pericycle in the susceptible zone of the uninoculated root. This, together with the identification of the cytokinin-responsive elements in the NIN promoter, strongly suggests that NIN expression is initially triggered by cytokinin signaling in the pericycle to initiate nodule primordium formation.

28 May 2024 in Entropy
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HNHartmut Neven
Hartmut Neven
AZAdam Zalcman
Adam Zalcman
PRPeter Read
Peter Read
KKKenneth S. Kosik
Kenneth S. Kosik
TMTjitse Van der Molen
Tjitse Van der Molen
CKChristof Koch
Christof Koch
The question of what generates conscious experience has mesmerized thinkers since the dawn of humanity, yet its origins remain a mystery. The topic of consciousness has gained traction in recent years, thanks to the development of large language models that now arguably pass the Turing test, an operational test for intelligence. However, intelligence and consciousness are not related in obvious ways, as anyone who suffers from a bad toothache can attest—pain generates intense feelings and absorbs all our conscious awareness, yet nothing particularly intelligent is going on. In the hard sciences, this topic is frequently met with skepticism because, to date, no protocol to measure the content or intensity of conscious experiences in an observer-independent manner has been agreed upon. Here, we present a novel proposal: Conscious experience arises whenever a quantum mechanical superposition forms. Our proposal has several implications: First, it suggests that the structure of the superposition determines the qualia of the experience. Second, quantum entanglement naturally solves the binding problem, ensuring the unity of phenomenal experience. Finally, a moment of agency may coincide with the formation of a superposition state. We outline a research program to experimentally test our conjecture via a sequence of quantum biology experiments. Applying these ideas opens up the possibility of expanding human conscious experience through brain–quantum computer interfaces.

16 August 2025 in Communications Biology
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DDDowlette-Mary Alam El Din
Dowlette-Mary Alam El Din
Leah Susanne MönkemöllerLeah Susanne Mönkemöller
Leah Susanne Mönkemöller
ALAlon Loeffler
Alon Loeffler
FHForough Habibollahi
Forough Habibollahi
JSJack Schenkman
Jack Schenkman
LSLena Smirnova
Lena Smirnova
Brain Microphysiological Systems, including neural organoids derived from human induced pluripotent stem cells, offer a unique lens to study the intricate workings of the human brain. This paper investigates the foundational elements of learning and memory in neural organoids by quantifying immediate early gene expression in response to chemical modulation, input-specific short- and long-term synaptic plasticity, neuronal network dynamics, connectivity, and criticality to demonstrate the utility of these organoids in basic science research. Neural organoids showed synapse formation, glutamatergic and GABAergic receptor expression, immediate early gene expression basally and evoked, functional connectivity, criticality, and synaptic plasticity in response to theta-burst stimulation. In addition, pharmacological interventions on GABAergic and glutamatergic receptors and input-specific theta-burst stimulation further shed light on the capacity of neural organoids to mirror synaptic modulation, specifically short- and long-term potentiation and depression, demonstrating their potential as tools for studying neurophysiological and neurological processes and informing therapeutic strategies for diseases.

24 November 2025 in Nature Neuroscience
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TMTjitse Van der Molen
Tjitse Van der Molen
ASAlex Spaeth
Alex Spaeth
MCMattia Chini
Mattia Chini
SHSebastian Hernandez
Sebastian Hernandez
GKGregory A. Kaurala
Gregory A. Kaurala
TSTal Sharf
Tal Sharf

8 December 2025 in Nature Electronics
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TJTaesung Jung
Taesung Jung
NZNanyu Zeng
Nanyu Zeng
JFJason D. Fabbri
Jason D. Fabbri
GEGuy Eichler
Guy Eichler
ZLZhe Li
Zhe Li
KSKenneth L. Shepard
Kenneth L. Shepard
Electrocorticography uses non-penetrating electrodes embedded in flexible substrates to record electrical activity from the surface of the brain. To use the technology to develop minimally invasive, high-bandwidth brain–computer interfaces, it will be necessary to improve the number of recording channels and the scalability of devices, which could be achieved by merging electrodes and electronics onto a single substrate. Here we report a 50-μm-thick, mechanically flexible micro-electrocorticography brain–computer interface that integrates a 256 × 256 array of electrodes, signal processing, data telemetry and wireless powering on a single complementary metal–oxide–semiconductor substrate. The device contains 65,536 recording electrodes, from which we can simultaneously record a selectable subset of up to 1,024 channels at a given time. Our chip is wirelessly powered, and when implanted below the dura, it can communicate bidirectionally with an external relay station outside the body. We show that the device can provide chronic, reliable recordings for up to two weeks in pigs and up to two months in behaving non-human primates from the somatosensory, motor and visual cortices, decoding brain signals at high spatiotemporal resolution.

7 July 2025 in Internet of Things
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Journal Article
Open access
KVKateryna Voitiuk
Kateryna Voitiuk
SSSpencer T. Seiler
Spencer T. Seiler
MMMirella Pessoa de Melo
Mirella Pessoa de Melo
JGJinghui Geng
Jinghui Geng
TMTjitse Van der Molen
Tjitse Van der Molen
MTMircea Teodorescu
Mircea Teodorescu
The analysis of tissue cultures requires a sophisticated integration and coordination of multiple technologies for monitoring and measuring. We have developed an automated research platform enabling independent devices to achieve collaborative objectives for feedback-driven cell culture studies. Our approach enables continuous, communicative, non-invasive interactions within an Internet of Things (IoT) architecture among various sensing and actuation devices, achieving precisely timed control of in vitro biological experiments. The framework integrates microfluidics, electrophysiology, and imaging devices to maintain cerebral cortex organoids while measuring their neuronal activity. The organoids are cultured in custom, 3D-printed chambers affixed to commercial microelectrode arrays. Periodic feeding is achieved using programmable microfluidic pumps. We developed a computer vision fluid volume estimator used as feedback to rectify deviations in microfluidic perfusion during media feeding/aspiration cycles. We validated the system with a set of 7-day studies of mouse cerebral cortex organoids, comparing manual and automated protocols. It was shown that the automated protocols maintained robust neural activity throughout the experiment while enabling hourly electrophysiology recordings during the experiments. The median firing rates of neural units increased for each sample, and dynamic patterns of organoid firing rates were revealed by high-frequency recordings. Surprisingly, feeding did not affect the firing rate. Furthermore, media exchange during a recording did not show acute effects on firing rate, enabling the use of this automated platform for reagent screening studies.