Ruochen Zhao

Dr. Ruochen Zhao

orcid

Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 January 2025 in Bioengineering
Verified
Journal Article
Open access
PDF file
WGWei Gan
Wei Gan
RZRuochen Zhao
Ruochen Zhao
YMYujie Ma
Yujie Ma
XNXiaolin Ning
Xiaolin Ning
Major depressive disorder (MDD) is a prevalent mental illness characterized by persistent sadness, loss of interest in activities, and significant functional impairment. It poses severe risks to individuals’ physical and psychological well-being. The development of automated diagnostic systems for MDD is essential to improve diagnostic accuracy and efficiency. Electroencephalography (EEG) has been extensively utilized in MDD diagnostic research. However, studies employing deep learning methods still face several challenges, such as difficulty in extracting effective information from EEG signals and risks of data leakage due to experimental designs. These issues result in limited generalization capabilities when models are tested on unseen individuals, thereby restricting their practical application. In this study, we propose a novel deep learning approach, termed TSF-MDD, which integrates temporal, spatial, and frequency-domain information. TSF-MDD first applies a data reconstruction scheme to obtain a four-dimensional temporal–spatial–frequency representation of EEG signals. These data are then processed by a model based on 3D-CNN and CapsNet, enabling comprehensive feature extraction across domains. Finally, a subject-independent data partitioning strategy is employed during training and testing to eliminate data leakage. The proposed approach achieves an accuracy of 92.1%, precision of 90.0%, recall of 94.9%, and F1-score of 92.4%, respectively, on the Mumtaz2016 public dataset. The results demonstrate that TSF-MDD exhibits excellent generalization performance.

6 August 2025 in NeuroImage
Verified
Journal Article
Open access
RWRuonan Wang
Ruonan Wang
YMYujie Ma
Yujie Ma
RZRuochen Zhao
Ruochen Zhao
JDJin Ding
Jin Ding
LLLing Li
Ling Li
XNXiaolin Ning
Xiaolin Ning
Magnetoencephalography (MEG) is a non-invasive imaging technique that captures neural activity with high spatio-temporal resolution. In recent years, novel wearable devices based on Optically Pumped Magnetometer (OPM) have emerged as a new driving force for advancing MEG due to their cost-effectiveness, portability, and mobility. In practical applications, MEG signals are frequently influenced by various interference sources, resulting in degradation of signal quality. Consequently, numerous suppression techniques have been proposed to overcome these challenges. This manuscript presents a comprehensive review of the most advanced methods for suppressing MEG noise or artifacts, with a specific focus on mitigating background noise, physiological artifacts (such as those caused by heartbeat, eye movements, and muscle contractions), as well as technical artifacts (including system-related artifacts associated with devices, motion-induced artifacts, and metal-induced artifacts). Additionally, the current limitations and challenges of these approaches in real-world scenarios are highlighted. Reviewing nearly a decade of research, there is an urgent need for a lightweight noise analysis framework in the complex measurement environment of wearable OPM-MEG devices. This framework should be capable of effectively detecting, classifying, and suppressing individual and combined MEG interference. By addressing this need, we can enhance the reliability and practicality of MEG signals while advancing brain science research.

27 March 2024 in Biomedical Signal Processing and Control
Verified
Journal Article
Closed access
RZRuochen Zhao
Ruochen Zhao
RWRuonan Wang
Ruonan Wang
YGYang Gao
Yang Gao
XNXiaolin Ning
Xiaolin Ning

6 January 2025 in NeuroImage
Verified
Journal Article
Open access
FWFulong Wang
Fulong Wang
YMYujie Ma
Yujie Ma
TGTianyu Gao
Tianyu Gao
YTYue Tao
Yue Tao
RWRuonan Wang
Ruonan Wang
XNXiaolin Ning
Xiaolin Ning
The optically pumped magnetometer (OPM) based magnetoencephalography (MEG) system offers advantages such as flexible layout and wearability. However, the position instability or jitter of OPM sensors can result in bad channels and segments, which significantly impede subsequent preprocessing and analysis. Most common methods directly reject or interpolate to repair these bad channels and segments. Direct rejection leads to data loss, and when the number of sensors is limited, interpolation using neighboring sensors can cause significant signal distortion and cannot repair bad segments present in all channels. Therefore, most existing methods are unsuitable for OPM-MEG systems with fewer channels. We introduce an automatic bad segments and bad channels repair method for OPM-MEG, called Repairbads. This method aims to repair all bad data and reduce signal distortion, especially capable of automatically repairing bad segments present in all channels simultaneously. Repairbads employs Riemannian Potato combined with joint decorrelation to project out artifact components, achieving automatic bad segment repair. Then, an adaptive algorithm is used to segment the signal into relatively stable noise data chunks, and the source-estimate-utilizing noise-discarding algorithm is applied to each chunk to achieve automatic bad channel repair. We compared the performance of Repairbads with the Autoreject method on both simulated and real auditory evoked data, using five evaluation metrics for quantitative assessment. The results demonstrate that Repairbads consistently outperforms across all five metrics. In both simulated and real OPM-MEG data, Repairbads shows better performance than current state-of-the-art methods, reliably repairing bad data with minimal distortion. The automation of this method significantly reduces the burden of manual inspection, promoting the automated processing and clinical application of OPM-MEG.

10 June 2024 in IEEE Transactions on Instrumentation and Measurement
Verified
Journal Article
Closed access
RWRuonan Wang
Ruonan Wang
XLXiaoyu Liang
Xiaoyu Liang
HWHUANQI Huanqi WU
HUANQI Huanqi WU
YYYanfei Yang
Yanfei Yang
RZRuochen Zhao
Ruochen Zhao
XNXiaolin Ning
Xiaolin Ning
Magnetoencephalography (MEG) is an important development in the field of noninvasive brain imaging. Nevertheless, MEG recordings are prone to contamination from background noise and other artifacts. The advantage of wearability and mobility of the optically pumped magnetometer (OPM) system has resulted in higher requirements for reducing interference. However, under the new OPM-MEG measurement system with limited channels, the effects of different interference suppression methods on background noise suppression have not been fully studied. We investigate six background noise suppression methods, including signal space projection, common temporal subspace projection (CTSP), signal space separation, spatiotemporal signal space separation, dual signal subspace projection (DSSP), and extended signal space separation. The relationships and differences between these methods are summarized. In addition, the sensitivity to its parameter and its robustness to noise of different intensities for each algorithm are verified via adequate simulation experiments. Finally, the performance of these methods is analyzed and evaluated by the semi-physical simulation experiments and the somatosensory evoked experiments of OPM-MEG for four subjects. We proposed, meanwhile, a new evaluation method for real OPM-MEG experiments. The results show that the improved CTSP method has the strongest noise reduction robustness based on the comprehensive evaluation of waveform reconstruction degree, signal-to-noise ratio, root mean square error, power spectral density reconstruction degree, source localization error, and expected source location deviation. This study provides a reference for the anti-jamming and evaluation of OPM-MEG.

4 June 2024 in NeuroImage
Verified
Journal Article
Open access
RWRuonan Wang
Ruonan Wang
KFKaiwen Fu
Kaiwen Fu
RZRuochen Zhao
Ruochen Zhao
DWDawei Wang
Dawei Wang
ZYZhimin Yang
Zhimin Yang
XNXiaolin Ning
Xiaolin Ning
Optically pumped magnetometer magnetoencephalography (OPM-MEG) holds significant promise for clinical functional brain imaging due to its superior spatiotemporal resolution. However, effectively suppressing metallic artifacts, particularly from devices such as orthodontic braces and vagal nerve stimulators remains a major challenge, hindering the wider clinical application of wearable OPM-MEG devices. A comprehensive analysis of metal artifact characteristics from time, frequency, and time-frequency perspectives was conducted for the first time using an OPM-MEG device in clinical medicine. This study focused on patients with metal orthodontics, examining the modulation of metal artifacts by breath and head movement, the incomplete regular sub-Gaussian distribution, and the high absolute power ratio in the 0.5-8 Hz band. The existing metal artifact suppression algorithms applied to SQUID-MEG, such as fast independent component analysis (FastICA), information maximization (Infomax), and algorithms for multiple unknown signal extraction (AMUSE), exhibit limited efficacy. Consequently, this study introduced the second-order blind identification (SOBI) algorithm, which utilized multiple time delays for the component separation of OPM-MEG measurement signals. We modified the time delays of the SOBI method to improve its efficacy in separating artifact components, particularly those in the ultralow frequency range. This approach employs the frequency-domain absolute power ratio, root mean square (RMS) value, and mutual information methods to automate the artifact component screening process. The effectiveness of this method was validated through simulation experiments involving four subjects in both resting and evoked experiments. In addition, the proposed method was also validated by the actual OPM-MEG evoked experiments of three subjects. Comparative analyses were conducted against the FastICA, Infomax, and AMUSE algorithms. Evaluation metrics included normalized mean square error, normalized delta band power error, RMS error, and signal-to-noise ratio, demonstrating that the proposed method provides optimal suppression of metal artifacts. This advancement holds promise for enhancing data quality and expanding the clinical applications of OPM-MEG.