Noémie De Zutter

Dr. Noémie De Zutter

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 May 2021 in Plant, Cell & Environment
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Journal Article
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WDWillem Desmedt
Willem Desmedt
WJWim Jonckheere
Wim Jonckheere
VNViet Ha Nguyen
Viet Ha Nguyen
MAMaarten Ameye
Maarten Ameye
NZNoémie De Zutter
Noémie De Zutter
TKTina Kyndt
Tina Kyndt

2 March 2022 in Frontiers in Plant Science
Verified
Journal Article
Open access
NZNoémie De Zutter
Noémie De Zutter
MAMaarten Ameye
Maarten Ameye
BBBoris Bekaert
Boris Bekaert
JVJan Verwaeren
Jan Verwaeren
LGLeen De Gelder
Leen De Gelder
KAKris Audenaert
Kris Audenaert
As the awareness on the ecological impact of chemical phosphate fertilizers grows, research turns to sustainable alternatives such as the implementation of phosphate solubilizing bacteria (PSB), which make largely immobile phosphorous reserves in soils available for uptake by plants. In this review, we introduce the mechanisms by which plants facilitate P-uptake and illustrate how PSB improve the bioavailability of this nutrient. Next, the effectiveness of PSB on increasing plant biomass and P-uptake is assessed using a meta-analysis approach. Our review demonstrates that improved P-uptake does not always translate in improved plant height and biomass. We show that the effect of PSB on plants does not provide an added benefit when using bacterial consortia compared to single strains. Moreover, the commonly reported species for P-solubilization, Bacillus spp. and Pseudomonas spp., are outperformed by the scarcely implemented Burkholderia spp. Despite the similar responses to PSB in monocots and eudicots, species responsiveness to PSB varies within both clades. Remarkably, the meta-analysis challenges the common belief that PSB are less effective under field conditions compared to greenhouse conditions. This review provides innovative insights and identifies key questions for future research on PSB to promote their implementation in agriculture.

22 May 2021 in Microbial Biotechnology
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Journal Article
Open access
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NZNoémie De Zutter
Noémie De Zutter
MAMaarten Ameye
Maarten Ameye
JDJane Debode
Jane Debode
Caroline De TenderCaroline De Tender
Caroline De Tender
SOSarah Ommeslag
Sarah Ommeslag
LGLeen De Gelder
Leen De Gelder
Summary: Phosphorus (P) is despite its omnipresence in soils often unavailable for plants. Rhizobacteria able to solubilize P are therefore crucial to avoid P deficiency. Selection for phosphate‐solubilizing bacteria (PSB) is frequently done in vitro ; however, rhizosphere competence is herein overlooked. Therefore, we developed an in planta enrichment concept enabling simultaneous microbial selection for P‐solubilization and rhizosphere competence. We used an ecologically relevant combination of iron‐ and aluminium phosphate to select for PSB in maize ( Zea mays L.). In each consecutive enrichment, plant roots were inoculated with rhizobacterial suspensions from plants that had grown in substrate with insoluble P. To assess the plants’ P statuses, non‐destructive multispectral imaging was used for quantifying anthocyanins, a proxy for maize’s P status. After the third consecutive enrichment, plants supplied with insoluble P and inoculated with rhizobacterial suspensions showed a P status similar to plants supplied with soluble P. A parallel metabarcoding approach uncovered that the improved P status in the third enrichment coincided with a shift in the rhizobiome towards bacteria with plant growth‐promoting and P‐solubilizing capacities. Finally, further consecutive enrichment led to a functional relapse hallmarked by plants with a low P status and a second shift in the rhizobiome at the level of Azospirillaceae and Rhizobiaceae.

21 December 2022 in Microbiology Spectrum
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Journal Article
Open access
NZNoémie De Zutter
Noémie De Zutter
MAMaarten Ameye
Maarten Ameye
PVPieter Vermeir
Pieter Vermeir
JVJan Verwaeren
Jan Verwaeren
LGLeen De Gelder
Leen De Gelder
KAKris Audenaert
Kris Audenaert
With the growing awareness on the ecological impact of chemical phosphate fertilizers, research concerning the use of phosphate solubilizing bacteria (PSB) as a sustainable alternative for, or addition to these fertilizers is of paramount importance. In previous research, we successfully implemented a plant-based enrichment technique for PSB, which simultaneously selected for the rhizosphere competence and phosphate solubilizing characteristics of bacterial suspensions.

20 February 2025 in Frontiers in Plant Science
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Journal Article
Open access
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Larissa De TroyerLarissa De Troyer
Larissa De Troyer
KAKris Audenaert
Kris Audenaert
SOSarah Ommeslag
Sarah Ommeslag
JDJane Debode
Jane Debode
LGLeen De Gelder
Leen De Gelder
NONo
No
Introduction: Fusarium Head Blight (FHB) is a major fungal disease in wheat caused by Fusarium graminearum, inducing severe yield losses. Biological control agents (BCAs) can be an effective and sustainable approach to mitigate this phytopathogen. In this study, Streptomyces rimosus subsp. rimosus LMG19352 was used as a BCA to mitigate F. graminearum on wheat ears. Moreover, we aimed to assess the impact of BCA inoculation on non-target microorganisms present on the wheat spikes. Therefore, we evaluated shifts in the fungal and bacterial spicosphere microbiome (i) over time from flowering to mid-grain filling stage and (ii) across inoculations with F. graminearum and/or S. rimosus subsp. rimosus LMG19352.Methods: FHB symptoms were determined by multispectral imaging, and Illumina MiSeq was used to amplify 16S V3-V4 rDNA for bacteria and ITS2 for fungi, whereafter a correlation network analysis was performed.Results: The biocontrol potential of S. rimosus subsp. rimosus LMG19352 against F. graminearum was confirmed, as FHB symptoms were significantly reduced. Based on the microbial abundances, S. rimosus subsp. rimosus LMG19352 compensated for shifts in the spicosphere microbiome community induced by FHB. These results were supported by a network analysis, revealing a more complex and stable microbiome in the presence of the BCA compared to the infected control.Discussion: To our knowledge, this study is the first to reveal the potential of a bacterial BCA to temper shifts in the wheat microbiome caused by a phytopathogen, and thereby acting as a promising BCA.

28 May 2024 in Toxins
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Journal Article
Open access
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Larissa De TroyerLarissa De Troyer
Larissa De Troyer
NZNoémie De Zutter
Noémie De Zutter
Sarah De SaegerSarah De Saeger
Sarah De Saeger
FDFrédéric Dumoulin
Frédéric Dumoulin
Siska CroubelsSiska Croubels
Siska Croubels
Kris AudenaertKris Audenaert
Kris Audenaert
Zearalenone (ZEN) is a prevalent mycotoxin found in grains and grain-derived products, inducing adverse health effects in both animals and humans. The in-field application of microorganisms to degrade and detoxify ZEN is a promising strategy to enhance the safety of food and feed. In this study, we investigated the potential of three actinobacterial strains to degrade and detoxify ZEN in vitro and in planta on wheat ears. The residual ZEN concentration and toxicity in the samples were analysed with UHPLC-MS/MS and a bioluminescence BLYES assay, respectively. Streptomyces rimosus subsp. rimosus LMG19352 could completely degrade and detoxify 5 mg/L ZEN in LB broth within 24 h, along with significant reductions in ZEN concentration both in a minimal medium (MM) and on wheat ears. Additionally, it was the only strain that showed a significant colonisation of these ears. Rhodococcus sp. R25614 exhibited partial but significant degradation in LB broth and MM, whereas Streptomyces sp. LMG16995 degraded and detoxified ZEN in LB broth after 72 h by 39% and 33%, respectively. Although all three actinobacterial strains demonstrated the metabolic capability to degrade and detoxify ZEN in vitro, only S. rimosus subsp. rimosus LMG19352 showed promising potential to mitigate ZEN in planta. This distinction underscores the importance of incorporating in planta screening assays for assessing the potential of mycotoxin-biotransforming microorganisms as biocontrol agents.