Dan Li

Dr. Dan Li


Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 August 2021 in Remote Sensing
Verified
Journal Article
Open access
PDF file
Dan LiDan Li
Dan Li
Yuxin MiaoYuxin Miao
Yuxin Miao
SGSanjay Gupta
Sanjay Gupta
CRCarl Rosen
Carl Rosen
FYFei Yuan
Fei Yuan
Yanbo HuangYanbo Huang
Yanbo Huang
Accurate high-resolution yield maps are essential for identifying spatial yield variability patterns, determining key factors influencing yield variability, and providing site-specific management insights in precision agriculture. Cultivar differences can significantly influence potato (Solanum tuberosum L.) tuber yield prediction using remote sensing technologies. The objective of this study was to improve potato yield prediction using unmanned aerial vehicle (UAV) remote sensing by incorporating cultivar information with machine learning methods. Small plot experiments involving different cultivars and nitrogen (N) rates were conducted in 2018 and 2019. UAV-based multi-spectral images were collected throughout the growing season. Machine learning models, i.e., random forest regression (RFR) and support vector regression (SVR), were used to combine different vegetation indices with cultivar information. It was found that UAV-based spectral data from the early growing season at the tuber initiation stage (late June) were more correlated with potato marketable yield than the spectral data from the later growing season at the tuber maturation stage. However, the best performing vegetation indices and the best timing for potato yield prediction varied with cultivars. The performance of the RFR and SVR models using only remote sensing data was unsatisfactory (R2 = 0.48–0.51 for validation) but was significantly improved when cultivar information was incorporated (R2 = 0.75–0.79 for validation). It is concluded that combining high spatial-resolution UAV images and cultivar information using machine learning algorithms can significantly improve potato yield prediction than methods without using cultivar information. More studies are needed to improve potato yield prediction using more detailed cultivar information, soil and landscape variables, and management information, as well as more advanced machine learning models.

27 July 2021 in Remote Sensing
Verified
Journal Article
Open access
PDF file
LWLi Wang
Li Wang
SCShuisen Chen
Shuisen Chen
Dan LiDan Li
Dan Li
CWChongyang Wang
Chongyang Wang
HJHao Jiang
Hao Jiang
ZPZhiping Peng
Zhiping Peng
Remote sensing-based mapping of crop nitrogen (N) status is beneficial for precision N management over large geographic regions. Both leaf/canopy level nitrogen content and accumulation are valuable for crop nutrient diagnosis. However, previous studies mainly focused on leaf nitrogen content (LNC) estimation. The effects of growth stages on the modeling accuracy have not been widely discussed. This study aimed to estimate different paddy rice N traits—LNC, plant nitrogen content (PNC), leaf nitrogen accumulation (LNA) and plant nitrogen accumulation (PNA)—from unmanned aerial vehicle (UAV)-based hyperspectral images. Additionally, the effects of the growth stage were evaluated. Univariate regression models on vegetation indices (VIs), the traditional multivariate calibration method, partial least squares regression (PLSR) and modern machine learning (ML) methods, including artificial neural network (ANN), random forest (RF), and support vector machine (SVM), were evaluated both over the whole growing season and in each single growth stage (including the tillering, jointing, booting and heading growth stages). The results indicate that the correlation between the four nitrogen traits and the other three biochemical traits—leaf chlorophyll content, canopy chlorophyll content and aboveground biomass—are affected by the growth stage. Within a single growth stage, the performance of selected VIs is relatively constant. For the full-growth-stage models, the performance of the VI-based models is more diverse. For the full-growth-stage models, the transformed chlorophyll absorption in the reflectance index/optimized soil-adjusted vegetation index (TCARI/OSAVI) performs best for LNC, PNC and PNA estimation, while the three band vegetation index (TBVITian) performs best for LNA estimation. There are no obvious patterns regarding which method performs the best of the PLSR, ANN, RF and SVM in either the growth-stage-specific or full-growth-stage models. For the growth-stage-specific models, a lower mean relative error (MRE) and higher R2 can be acquired at the tillering and jointing growth stages. The PLSR and ML methods yield obviously better estimation accuracy for the full-growth-stage models than the VI-based models. For the growth-stage-specific models, the performance of VI-based models seems optimal and cannot be obviously surpassed. These results suggest that building linear regression models on VIs for paddy rice nitrogen traits estimation is still a reasonable choice when only a single growth stage is involved. However, when multiple growth stages are involved or missing the phenology information, using PLSR or ML methods is a better option.

10 April 2019 in Remote Sensing
Verified
Journal Article
Open access
PDF file
HJHao Jiang
Hao Jiang
Dan LiDan Li
Dan Li
Jing WenlongJing Wenlong
Jing Wenlong
jianhui xujianhui xu
jianhui xu
Jianxi HuangJianxi Huang
Jianxi Huang
SCShuisen Chen
Shuisen Chen
More than 90% of the sugar production in China comes from sugarcane, which is widely grown in South China. Optical image time series have proven to be efficient for sugarcane mapping. There are, however, two limitations associated with previous research: one is that the critical observations during the sugarcane growing season are limited due to frequent cloudy weather in South China; the other is that the classification method requires imagery time series covering the entire growing season, which reduces the time efficiency. The Sentinel-1A (S1A) synthetic aperture radar (SAR) data featuring relatively high spatial-temporal resolution provides an ideal data source for all-weather observations. In this study, we attempted to develop a method for the early season mapping of sugarcane. First, we proposed a framework consisting of two procedures: initial sugarcane mapping using the S1A SAR imagery time series, followed by non-vegetation removal using Sentinel-2 optical imagery. Second, we tested the framework using an incremental classification strategy based on S1A imagery covering the entire 2017–2018 sugarcane season. The study area was in Suixi and Leizhou counties of Zhanjiang city, China. Results indicated that an acceptable accuracy, in terms of Kappa coefficient, can be achieved to a level above 0.902 using time series three months before sugarcane harvest. In general, sugarcane mapping utilizing the combination of VH + VV as well as VH polarization alone outperformed mapping using VV alone. Although the XGBoost classifier with VH + VV polarization achieved a maximum accuracy that was slightly lower than the random forest (RF) classifier, the XGBoost shows promising performance in that it was more robust to overfitting with noisy VV time series and the computation speed was 7.7 times faster than RF classifier. The total sugarcane areas in Suixi and Leizhou for the 2017–2018 harvest year estimated by this study were approximately 598.95 km2 and 497.65 km2, respectively. The relative accuracy of the total sugarcane mapping area was approximately 86.3%.

15 January 2022 in Remote Sensing
Verified
Journal Article
Open access
PDF file
Dan LiDan Li
Dan Li
Yuxin MiaoYuxin Miao
Yuxin Miao
CRCurtis Ransom
Curtis Ransom
GBGregory Mac Bean
Gregory Mac Bean
NKNewell Kitchen
Newell Kitchen
JSJohn Shanahan
John Shanahan
Accurate nitrogen (N) diagnosis early in the growing season across diverse soil, weather, and management conditions is challenging. Strategies using multi-source data are hypothesized to perform significantly better than approaches using crop sensing information alone. The objective of this study was to evaluate, across diverse environments, the potential for integrating genetic (e.g., comparative relative maturity and growing degree units to key developmental growth stages), environmental (e.g., soil and weather), and management (e.g., seeding rate, irrigation, previous crop, and preplant N rate) information with active canopy sensor data for improved corn N nutrition index (NNI) prediction using machine learning methods. Thirteen site-year corn (Zea mays L.) N rate experiments involving eight N treatments conducted in four US Midwest states in 2015 and 2016 were used for this study. A proximal RapidSCAN CS-45 active canopy sensor was used to collect corn canopy reflectance data around the V9 developmental growth stage. The utility of vegetation indices and ancillary data for predicting corn aboveground biomass, plant N concentration, plant N uptake, and NNI was evaluated using singular variable regression and machine learning methods. The results indicated that when the genetic, environmental, and management data were used together with the active canopy sensor data, corn N status indicators could be more reliably predicted either using support vector regression (R2 = 0.74–0.90 for prediction) or random forest regression models (R2 = 0.84–0.93 for prediction), as compared with using the best-performing single vegetation index or using a normalized difference vegetation index (NDVI) and normalized difference red edge (NDRE) together (R2 < 0.30). The N diagnostic accuracy based on the NNI was 87% using the data fusion approach with random forest regression (kappa statistic = 0.75), which was better than the result of a support vector regression model using the same inputs. The NDRE index was consistently ranked as the most important variable for predicting all the four corn N status indicators, followed by the preplant N rate. It is concluded that incorporating genetic, environmental, and management information with canopy sensing data can significantly improve in-season corn N status prediction and diagnosis across diverse soil and weather conditions.

13 July 2017 in Remote Sensing
Verified
Journal Article
Open access
PDF file
HJHao Jiang
Hao Jiang
SCShuisen Chen
Shuisen Chen
Dan LiDan Li
Dan Li
CWChongyang Wang
Chongyang Wang
JYJi Yang
Ji Yang
The use of unmanned aerial vehicles (UAV) can allow individual tree detection for forest inventories in a cost-effective way. The scale-space filtering (SSF) algorithm is commonly used and has the capability of detecting trees of different crown sizes. In this study, we made two improvements with regard to the existing method and implementations. First, we incorporated SSF with a Lab color transformation to reduce over-detection problems associated with the original luminance image. Second, we ported four of the most time-consuming processes to the graphics processing unit (GPU) to improve computational efficiency. The proposed method was implemented using PyCUDA, which enabled access to NVIDIA’s compute unified device architecture (CUDA) through high-level scripting of the Python language. Our experiments were conducted using two images captured by the DJI Phantom 3 Professional and a most recent NVIDIA GPU GTX1080. The resulting accuracy was high, with an F-measure larger than 0.94. The speedup achieved by our parallel implementation was 44.77 and 28.54 for the first and second test image, respectively. For each 4000 × 3000 image, the total runtime was less than 1 s, which was sufficient for real-time performance and interactive application.

14 January 2021 in Remote Sensing
Verified
Journal Article
Open access
PDF file
Qiong ZhengQiong Zheng
Qiong Zheng
HYHuichun Ye
Huichun Ye
Wenjiang HuangWenjiang Huang
Wenjiang Huang
YDYingying Dong
Yingying Dong
HJHao Jiang
Hao Jiang
SCShuisen Chen
Shuisen Chen
Wheat yellow rust has a severe impact on wheat production and threatens food security in China; as such, an effective monitoring method is necessary at the regional scale. We propose a model for yellow rust monitoring based on Sentinel-2 multispectral images and a series of two-stage vegetation indices and meteorological data. Sensitive spectral vegetation indices (single- and two-stage indices) and meteorological features for wheat yellow rust discrimination were selected using the random forest method. Wheat yellow rust monitoring models were established using three different classification methods: linear discriminant analysis (LDA), support vector machine (SVM), and artificial neural network (ANN). The results show that models based on two-stage indices (i.e., those calculated using images from two different days) significantly outperform single-stage index models (i.e., those calculated using an image from a single day), the overall accuracy improved from 63.2% to 78.9%. The classification accuracies of models combining a vegetation index with meteorological feature are higher than those of pure vegetation index models. Among them, the model based on two-stage vegetation indices and meteorological features performs best, with a classification accuracy exceeding 73.7%. The SVM algorithm performed best for wheat yellow rust monitoring among the three algorithms; its classification accuracy (84.2%) was ~10.5% and 5.3% greater than those of LDA and ANN, respectively. Combined with crop growth and environmental information, our model has great potential for monitoring wheat yellow rust at a regional scale. Future work will focus on regional-scale monitoring and forecasting of crop disease.