Yuki Tobimatsu

Dr. Yuki Tobimatsu

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 September 2019 in The EMBO Journal
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Journal Article
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MLMyoung‐Hoon Lee
Myoung‐Hoon Lee
HJHwi Seong Jeon
Hwi Seong Jeon
SKSeu Ha Kim
Seu Ha Kim
JCJoo Hee Chung
Joo Hee Chung
DRDaniele Roppolo
Daniele Roppolo
OPOhkmae K Park
Ohkmae K Park
EMBO Press is an editorially independent publishing platform for the development of EMBO scientific publications.

16 March 2014 in Nature
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Journal Article
Closed access
NBNicholas D. Bonawitz
Nicholas D. Bonawitz
JKJeong Im Kim
Jeong Im Kim
YTYuki Tobimatsu
Yuki Tobimatsu
PCPeter N. Ciesielski
Peter N. Ciesielski
NANickolas A. Anderson
Nickolas A. Anderson
CCClint Chapple
Clint Chapple

1 April 2019 in Current Opinion in Biotechnology
Verified
Journal Article
Open access
YTYuki Tobimatsu
Yuki Tobimatsu
MSMathias Schuetz
Mathias Schuetz
The final step of lignin biosynthesis is the polymerization of monolignols in apoplastic cell wall domains. In this process, monolignols secreted by lignifying cells, or occasionally neighboring non-lignifying and/or other lignifying cells, are activated by cell-wall-localized oxidation systems, such as laccase/O2 and/or peroxidase/H2O2, for combinatorial radical coupling to make the final lignin polymers. Plants can precisely control when, where, and which types of lignin polymers are assembled at tissue and cellular levels, but do not control the polymers' exact chemical structures per se. Recent studies have begun to identify specific laccase and peroxidase proteins responsible for lignin polymerization in specific cell types and during different developmental stages. The coordination of polymerization machinery localization and monolignol supply is likely critical for the spatio-temporal patterning of lignin polymerization. Further advancement in this research area will continue to increase our capacity to manipulate lignin content/structure in biomass to meet our own biotechnological purposes.

17 January 2012 in Proceedings of the National Academy of Sciences
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FCFang Chen
Fang Chen
YTYuki Tobimatsu
Yuki Tobimatsu
DHDaphna Havkin-Frenkel
Daphna Havkin-Frenkel
RDRichard A. Dixon
Richard A. Dixon
JRJohn Ralph
John Ralph
Lignins are complex phenylpropanoid polymers mostly associated with plant secondary cell walls. Lignins arise primarily via oxidative polymerization of the three monolignols,p-coumaryl, coniferyl, and sinapyl alcohols. Of the two hydroxycinnamyl alcohols that represent incompletely methylated biosynthetic products (and are not usually considered to be monolignols), 5-hydroxyconiferyl alcohol is now well established as incorporating into angiosperm lignins, but incorporation of caffeyl alcohol has not been shown. We report here the presence of a homopolymer of caffeyl alcohol in the seed coats of both monocot and dicot plants. This polymer (C-lignin) is deposited to high concentrations in the seed coat during the early stages of seed development in the vanilla orchid (Vanilla planifolia), and in several members of the Cactaceae. The lignin in other parts of the Vanilla plant is conventionally biosynthesized from coniferyl and sinapyl alcohols. Some species of cacti contain only C-lignin in their seeds, whereas others contain only classical guaiacyl/syringyl lignin (derived from coniferyl and sinapyl alcohols). NMR spectroscopic analysis revealed that the Vanilla seed-coat polymer was massively comprised of benzodioxane units and was structurally similar to the polymer synthesized in vitro by peroxidase-catalyzed polymerization of caffeyl alcohol. CD spectroscopy did not detect any optical activity in the seed polymer. These data support the contention that the C-lignin polymer is produced in vivo via combinatorial oxidative radical coupling that is under simple chemical control, a mechanism analogous to that theorized for classical lignin biosynthesis.

25 August 2014 in Plant Physiology
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MSMathias Schuetz
Mathias Schuetz
ABAnika Benske
Anika Benske
RSRebecca A. Smith
Rebecca A. Smith
YWYoichiro Watanabe
Yoichiro Watanabe
YTYuki Tobimatsu
Yuki Tobimatsu
ASA. Lacey Samuels
A. Lacey Samuels
Plants precisely control lignin deposition in spiral or annular secondary cell wall domains during protoxylem tracheary element (TE) development. Because protoxylem TEs function to transport water within rapidly elongating tissues, it is important that lignin deposition is restricted to the secondary cell walls in order to preserve the plasticity of adjacent primary wall domains. The Arabidopsis (Arabidopsis thaliana) inducible VASCULAR NAC DOMAIN7 (VND7) protoxylem TE differentiation system permits the use of mutant backgrounds, fluorescent protein tagging, and high-resolution live-cell imaging of xylem cells during secondary cell wall development. Enzymes synthesizing monolignols, as well as putative monolignol transporters, showed a uniform distribution during protoxylem TE differentiation. By contrast, the oxidative enzymes LACCASE4 (LAC4) and LAC17 were spatially localized to secondary cell walls throughout protoxylem TE differentiation. These data support the hypothesis that precise delivery of oxidative enzymes determines the pattern of cell wall lignification. This view was supported by lac4lac17 mutant analysis demonstrating that laccases are necessary for protoxylem TE lignification. Overexpression studies showed that laccases are sufficient to catalyze ectopic lignin polymerization in primary cell walls when exogenous monolignols are supplied. Our data support a model of protoxylem TE lignification in which monolignols are highly mobile once exported to the cell wall, and in which precise targeting of laccases to secondary cell wall domains directs lignin deposition.

7 September 2018 in Science Advances
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YLYanding Li
Yanding Li
Li ShuaiLi Shuai
Li Shuai
HKHoon Kim
Hoon Kim
AMAli Hussain Motagamwala
Ali Hussain Motagamwala
JMJustin Mobley
Justin Mobley
JRJohn Ralph
John Ralph
The structural homogeneity and acid stability of linear C -lignins allow their deconstruction to useful monomers in high yield.