Zhongmin Yan

Dr. Zhongmin Yan


Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 May 2023 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
STSaisai Teng
Saisai Teng
CYChenglin Yin
Chenglin Yin
YWYu Wang
Yu Wang
XCXiandong Chen
Xiandong Chen
Zhongmin YanZhongmin Yan
Zhongmin Yan
LWLeyi Wei
Leyi Wei

2 December 2021 in IEEE/ACM Transactions on Computational Biology and Bioinformatics
Verified
Journal Article
Closed access
XWXingze Wang
Xingze Wang
Guoxian YuGuoxian Yu
Guoxian Yu
Zhongmin YanZhongmin Yan
Zhongmin Yan
LWLin Wan
Lin Wan
WWWei Wang
Wei Wang
LCLizhen Cui
Lizhen Cui
Although deep learning techniques have made great success in computer vision and other fields, they do not work well on Lung cancer subtype diagnosis, due to the distinction of slide images between different cancer subtypes is ambiguous. Furthermore, they often over-fit to high-dimensional genomics data with limited samples, and do not fuse the image and genomics data in a sensible way. In this paper, we propose a hybrid deep network based approach LungDIG for Lung cancer subtype Diagnosis. LungDIG firstly tiles the tissue slide image into small patches and extracts the patch-level features by fine-tuning an Inception-V3 model. Since the patches may contain some false positives in non-diagnostic regions, it further designs a patch-level feature combination strategy to integrate the extracted patch features and maintain the diversity between cancer subtypes. At the same time, it extracts the genomics features from Copy Number Variation data by an attention based nonlinear extractor. Next, it fuses the image and genomics features by an attention based multilayer perceptron (MLP) to diagnose cancer subtype. Experiments on TCGA lung cancer data show that LungDIG not only achieves higher accuracy for cancer subtype diagnosis than state-of-the-art methods, but also has a high authenticity and good interpretability.


10 July 2020 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Closed access
YRYongjian Ren
Yongjian Ren
YSYuliang Shi
Yuliang Shi
KZKun Zhang
Kun Zhang
ZCZhiyong Chen
Zhiyong Chen
Zhongmin YanZhongmin Yan
Zhongmin Yan
Nowadays, prediction for medical treatment migration has become one of the interesting issues in the field of health informatics. This is because the medical treatment migration behavior is closely related to the evaluation of regional medical level, the rational use of medical resources, and the distribution of medical insurance. Therefore, a prediction model for medical treatment migration based on medical insurance data is introduced in this paper. First, a medical treatment graph is constructed based on medical insurance data. The medical treatment graph is a heterogeneous graph, which contains entities such as patients, diseases, hospitals, medicines, hospitalization events, and the relations between these entities. However, existing graph neural networks are unable to capture the time-series relationships between event-type entities. To this end, a prediction model based on Graph Convolutional Network (GCN) is proposed in this paper, namely, Event-involved GCN (EGCN). The proposed model aggregates conventional entities based on attention mechanism, and aggregates event-type entities based on a gating mechanism similar to LSTM. In addition, jumping connection is deployed to obtain the final node representation. In order to obtain embedded representations of medicines based on external information (medicine descriptions), an automatic encoder capable of embedding medicine descriptions was deployed in the proposed model. Finally, extensive experiments is conducted on a real medical insurance data set. Experimental results show that our model's predictive ability is better than the best models available.


16 July 2022 in Digital Communications and Networks
Verified
Journal Article
Open access
TDTong Ding
Tong Ding
LLLei Liu
Lei Liu
YZYi Zhu
Yi Zhu
LCLizhen Cui
Lizhen Cui
Zhongmin YanZhongmin Yan
Zhongmin Yan