Ya Gao

Ya Gao


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
19 January 2015 in Ultrasound in Obstetrics & Gynecology
Verified
Journal Article
Open access
PDF file
HZH. Zhang
H. Zhang
YGYa Gao
Ya Gao
FJF. Jiang
F. Jiang
MFM. Fu
M. Fu
YYY. Yuan
Y. Yuan
WWW. Wang
W. Wang
Objectives: To report the clinical performance of massively parallel sequencing‐based non‐invasive prenatal testing (NIPT) in detecting trisomies 21, 18 and 13 in over 140 000 clinical samples and to compare its performance in low‐risk and high‐risk pregnancies.Methods: Between 1 January 2012 and 31 August 2013, 147 314 NIPT requests to screen for fetal trisomies 21, 18 and 13 using low‐coverage whole‐genome sequencing of plasma cell‐free DNA were received. The results were validated by karyotyping or follow‐up of clinical outcomes.Results: NIPT was performed and results obtained in 146 958 samples, for which outcome data were available in 112 669 (76.7%). Repeat blood sampling was required in 3213 cases and 145 had test failure. Aneuploidy was confirmed in 720/781 cases positive for trisomy 21, 167/218 cases positive for trisomy 18 and 22/67 cases positive for trisomy 13 on NIPT. Nine false negatives were identified, including six cases of trisomy 21 and three of trisomy 18. The overall sensitivity of NIPT was 99.17%, 98.24% and 100% for trisomies 21, 18 and 13, respectively, and specificity was 99.95%, 99.95% and 99.96% for trisomies 21, 18 and 13, respectively. There was no significant difference in test performance between the 72 382 high‐risk and 40 287 low‐risk subjects (sensitivity, 99.21% vs 98.97% (P = 0.82); specificity, 99.95% vs 99.95% (P = 0.98)). The major factors contributing to false‐positive and false‐negative NIPT results were maternal copy number variant and fetal/placental mosaicism, but fetal fraction had no effect.Conclusions: Using a stringent protocol, the good performance of NIPT shown by early validation studies can be maintained in large clinical samples. This technique can provide equally high sensitivity and specificity in screening for trisomy 21 in a low‐risk, as compared to high‐risk, population. Copyright © 2015 ISUOG. Published by John Wiley & Sons Ltd.

1 November 2015 in Reproductive Sciences
Verified
Journal Article
Closed access
YZYi Zhou
Yi Zhou
ZZZhongyi Zhu
Zhongyi Zhu
YGYa Gao
Ya Gao
YYYuying Yuan
Yuying Yuan
YGYulai Guo
Yulai Guo
WWWei Wang
Wei Wang

22 October 2024 in Cell Discovery
Verified
Journal Article
Open access
PDF file
Yan-Ting WuYan-Ting Wu
Yan-Ting Wu
KSKaizhen Su
Kaizhen Su
YZYing Zhang
Ying Zhang
LLLangchao Liang
Langchao Liang
FWFei Wang
Fei Wang
HHHe-Feng Huang
He-Feng Huang
The placenta, a temporary but essential organ for gestational support, undergoes intricate morphological and functional transformations throughout gestation. However, the spatiotemporal patterns of gene expression underlying placentation remain poorly understood. Utilizing Stereo-seq, we constructed a Mouse Placentation Spatiotemporal Transcriptomic Atlas (MPSTA) spanning from embryonic day (E) 7.5 to E14.5, which includes the transcriptomes of large trophoblast cells that were not captured in previous single-cell atlases. We defined four distinct strata of the ectoplacental cone, an early heterogeneous trophectoderm structure, and elucidated the spatial trajectory of trophoblast differentiation during early postimplantation stages before E9.5. Focusing on the labyrinth region, the interface of nutrient exchange in the mouse placenta, our spatiotemporal ligand–receptor interaction analysis unveiled pivotal modulators essential for trophoblast development and placental angiogenesis. We also found that paternally expressed genes are exclusively enriched in the placenta rather than in the decidual regions, including a cluster of genes enriched in endothelial cells that may function in placental angiogenesis. At the invasion front, we identified interface-specific transcription factor regulons, such as Atf3, Jun, Junb, Stat6, Mxd1, Maff, Fos, and Irf7, involved in gestational maintenance. Additionally, we revealed that maternal high-fat diet exposure preferentially affects this interface, exacerbating inflammatory responses and disrupting angiogenic homeostasis. Collectively, our findings furnish a comprehensive, spatially resolved atlas that offers valuable insights and benchmarks for future explorations into placental morphogenesis and pathology.

7 June 2016 in Prenatal Diagnosis
Verified
Journal Article
Closed access
PDF file
YTYueqiu Tan
Yueqiu Tan
YGYa Gao
Ya Gao
GLGe Lin
Ge Lin
MFMeili Fu
Meili Fu
XLXihong Li
Xihong Li
WWWei Wang
Wei Wang

3 November 2023 in Science Advances
Verified
Journal Article
Open access
QZQingqing Zhang
Qingqing Zhang
CLCheuk-Lun Lee
Cheuk-Lun Lee
TYTingyu Yang
Tingyu Yang
JLJianlin Li
Jianlin Li
QZQunxiong Zeng
Qunxiong Zeng
PCPhilip C.N. Chiu
Philip C.N. Chiu
Early-onset preeclampsia (EOPE) is a severe pregnancy complication associated with defective trophoblast differentiation and functions at implantation, but manifestation of its phenotypes is in late pregnancy. There is no reliable method for early prediction and treatment of EOPE. Adrenomedullin (ADM) is an abundant placental peptide in early pregnancy. Integrated single-cell sequencing and spatial transcriptomics confirm a high ADM expression in the human villous cytotrophoblast and syncytiotrophoblast. The levels of ADM in chorionic villi and serum were lower in first-trimester pregnant women who later developed EOPE than those with normotensive pregnancy. ADM stimulates differentiation of trophoblast stem cells and trophoblast organoids in vitro. In pregnant mice, placenta-specific ADM suppression led to EOPE-like phenotypes. The EOPE-like phenotypes in a mouse PE model were reduced by a placenta-specific nanoparticle-based forced expression of ADM. Our study reveals the roles of trophoblastic ADM in placental development, EOPE pathogenesis, and its potential clinical uses.

14 July 2016 in PLOS ONE
Verified
Journal Article
Open access
PDF file
HLHongtai Liu
Hongtai Liu
YGYa Gao
Ya Gao
ZHZhiyang Hu
Zhiyang Hu
LLLinhua Lin
Linhua Lin
XYXuyang Yin
Xuyang Yin
WWWei Wang
Wei Wang
The aim of this study was to assess the performance of noninvasively prenatal testing (NIPT) for fetal copy number variants (CNVs) in clinical samples, using a whole-genome sequencing method. A total of 919 archived maternal plasma samples with karyotyping/microarray results, including 33 CNVs samples and 886 normal samples from September 1, 2011 to May 31, 2013, were enrolled in this study. The samples were randomly rearranged and blindly sequenced by low-coverage (about 7M reads) whole-genome sequencing of plasma DNA. Fetal CNVs were detected by Fetal Copy-number Analysis through Maternal Plasma Sequencing (FCAPS) to compare to the karyotyping/microarray results. Sensitivity, specificity and were evaluated. 33 samples with deletions/duplications ranging from 1 to 129 Mb were detected with the consistent CNV size and location to karyotyping/microarray results in the study. Ten false positive results and two false negative results were obtained. The sensitivity and specificity of detection deletions/duplications were 84.21% and 98.42%, respectively. Whole-genome sequencing-based NIPT has high performance in detecting genome-wide CNVs, in particular >10Mb CNVs using the current FCAPS algorithm. It is possible to implement the current method in NIPT to prenatally screening for fetal CNVs.