Nataliya Kozobkova

Ms. Nataliya Kozobkova

Federal Center Research Fundamentals of Biotechnology, Moscow, Moskva, Russia
orcid

Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Verified
Journal Article
Open access
PDF file
NKNataliya Kozobkova
Nataliya Kozobkova
MSMichael Samtsov
Michael Samtsov
ALAnatol Petrovich Lugovski
Anatol Petrovich Lugovski
NBNikita Belko
Nikita Belko
DTDmitri Tarasov
Dmitri Tarasov
MSMargarita Shleeva
Margarita Shleeva
The spread of multidrug-resistant mycobacterium strains requires the development of new approaches to combat diseases caused by these pathogens. For that, photodynamic inactivation (PDI) is a promising approach. In this study, a tricarbocyanine (TCC) is used for the first time as a near-infrared (740 nm) activatable PDI photosensitizer to kill mycobacteria with deep light penetration. For better targeting, a novel tricarbocyanine dye functionalized with two trehalose units (TCC2Tre) is developed. The photodynamic effect of the conjugates against mycobacteria, including Mycobacterium tuberculosis, is evaluated. Under irradiation, TCC2Tre causes more effective killing of mycobacteria compared to the photosensitizer without trehalose conjugation, with 99.99% dead vegetative cells of M. tuberculosis and M. smegmatis. In addition, effective photoinactivation of dormant forms of M. smegmatis is observed after incubation with TCC2Tre. Mycobacteria treated with TCC2Tre are more sensitive to 740 nm light than the Gram-positive Micrococcus luteus and the Gram-negative Escherichia coli. For the first time, this study demonstrates the proof of principle of in vitro PDI of mycobacteria including the fast-growing M. smegmatis and the slow-growing M. tuberculosis using near-infrared activatable photosensitizers conjugated with trehalose. These findings are useful for the development of new efficient alternatives to antibiotic therapy.

29 April 2026 in Pharmaceuticals
Verified
Journal Article
Open access
PDF file
MSMargarita Shleeva
Margarita Shleeva
NKNataliya Kozobkova
Nataliya Kozobkova
GDGalina Demina
Galina Demina
AKArseny Kaprelyants
Arseny Kaprelyants
Background/Objectives: The escalating crisis of antibiotic resistance and the inherent limitations of conventional antibiotics necessitate the development of innovative therapeutic strategies. Targeted drug delivery (TDD) offers a powerful approach to enhance efficacy, minimize systemic toxicity, and circumvent bacterial resistance. This systematic review aims to evaluate the potential of unique bacterial transport systems (BTSs), surface specific receptors and intracellular enzymes as platforms for TDD via the “Trojan Horse” strategy (THS). Methods: A comprehensive literature review was conducted, focusing on studies that investigated the specificity and mechanisms of BTSs responsible for the uptake of metabolites that are essential for and unique to bacteria. This includes an analysis of transport systems for siderophores, bacteria-specific sugars, cell wall components, D-amino acids, and vitamins. We assessed preclinical and clinical examples of drug conjugates utilizing these pathways, as well as emerging platforms such as bacteriophage-derived proteins, antibody–antibiotic conjugates, and bacterial extracellular vesicles (EVs). Results: BTSs demonstrate high specificity for their cognate substrates, providing effective molecular gateways for TDD of drugs photosensitizers and diagnostic probes in form of conjugates. The siderophore–cephalosporin conjugate cefiderocol represents a clinically validated example, having received FDA approval. Preclinical studies further reveal that conjugates utilizing sugars (e.g., maltose, trehalose) and vitamins (e.g., B12) can significantly enhance antibiotic uptake and activity against both Gram-positive and Gram-negative pathogens, including drug-resistant strains. Emerging platforms like bacteriophage endolysins and engineered EVs show promise for overcoming biological barriers such as bacterial outer membranes and intracellular host niches. Conclusions: The THS leveraging BTSs represents a clinically viable and promising avenue for next-generation antibacterial therapies. Advantages of BTS include overcoming bacterial resistance, such as reduced membrane permeability and efflux pumps, enabling the “revival” of antibiotics that are poorly permeable or toxic, increasing their local concentration at the target site and reducing side effects on host cells. While significant progress has been made, a striking disconnect persists between the hundreds of conjugates demonstrating potent in vitro activity and the limited agent that has achieved clinical use. This in vitro–in vivo gap reflects, in large part, the early stage of this field rather than a fundamental failure. Further research is critically needed not only to identify novel BTSs and optimize drug-linker chemistry, but also to systematically address the translational barriers—including poor pharmacokinetics, immunogenicity, and unexpected toxicity—that have prevented most promising candidates from advancing beyond preclinical evaluation.

Verified
Journal Article
Open access
PDF file
LTLarisa M. Timofeeva
Larisa M. Timofeeva
YSYulia A. Simonova
Yulia A. Simonova
IEIvan V. Eremenko
Ivan V. Eremenko
MFMarina Filatova
Marina Filatova
MTMaxim Topchiy
Maxim Topchiy
MEMikhail Eropkin
Mikhail Eropkin
A series of antimicrobial protonated diallylammonium polymers, poly(diallylammonium trifluoroacetate) (PDAATFA), were synthesized by classical polymerization, using an especially elaborated method for preparation of polymers with low molecular weight (MW), and by RAFT polymerization, with different end groups in a range of MW values of (8–43) × 103 g∙mol−1. Cytotoxicity relative to eukaryotic cells (epithelioid lines A-549 and MA-104) and bactericidal activity of the polymers (relative to Pseudomonas aeruginosa and Staphylococcus aureus) are investigated. The effect of the end groups and MW on toxicity and bactericidal activity is shown. Dependence of the activity and, most of all, cytotoxicity on MW is preserved even at a small difference in MW values in the MW range of (18–40) × 103 g·mol−1. A clear dependence of the studied properties on the nature of the terminal group is revealed. Sulfate -O-S(=O)2-O¯ end group has a noticeable effect on the bactericidal efficiency and smaller influence on toxicity, while dithiocarbonyl end group -S-C(=S)-O-CH2-CH3 has a significant effect on efficiency and especially toxicity, drastically increasing the latter. Overall, based on the results obtained, polymers PDAATFA of low MW are considered promising antimicrobial agents for the creation of new transdermal drugs.

18 June 2024 in Preprints.org
Verified
Preprint
Open access
PDF file
NKNataliya Kozobkova
Nataliya Kozobkova
MSMichael Samtsov
Michael Samtsov
ALAnatol Petrovich Lugovski
Anatol Petrovich Lugovski
NBNikita Belko
Nikita Belko
DTDmitri Tarasov
Dmitri Tarasov
MSMargarita Shleeva
Margarita Shleeva
The spread of multidrug-resistant mycobacterium strains requires the development of new approaches to combat diseases caused by these pathogens. For that, photodynamic inactivation (PDI) is a promising approach. In this study, a tricarbocyanine (TCC) is used for the first time as a near-infrared (740 nm) activatable PDI photosensitizer to kill mycobacteria with deeper light penetration. For better targeting, a novel tricarbocyanine dye functionalized with two trehalose units (TCC2Tre) is developed. The photodynamic effect of the conjugate against mycobacteria, including Mycobacterium tuberculosis, is evaluated. Under irradiation, TCC2Tre causes more effective killing of mycobacteria compared to the photosensitizer without trehalose conjugation, with 99.99% dead vegetative cells of M. tuberculosis and M. smegmatis. In addition, effective photoinactivation of dormant forms of M. smegmatis is observed after incubation with TCC2Tre. Mycobacteria treated with TCC2Tre are more sensitive to 740 nm light than the Gram-positive Micrococcus luteus and the Gram-negative Escherichia coli. For the first time, this study demonstrates the possibility of in vitro PDI of mycobacteria including the fast-growing M. smegmatis and the slow-growing M. tuberculosis using near-infrared activatable photosensitizers. These findings are useful for the development of new efficient alternatives to antibiotic therapy.

5 December 2024 in Preprints.org
Verified
Preprint
Open access
PDF file
LTLarisa M. Timofeeva
Larisa M. Timofeeva
YSYulia A. Simonova
Yulia A. Simonova
IEIvan V. Eremenko
Ivan V. Eremenko
MFMarina Filatova
Marina Filatova
MTMaxim Topchiy
Maxim Topchiy
MEMikhail Eropkin
Mikhail Eropkin
A series of antimicrobial protonated diallylammonium polymers, poly(diallylammonium trifluoroacetate) (PDAATFA), have been synthesized by classical polymerization, using especially elaborated method for preparation of polymers with small molecular weight (MW), and by RAFT polymerization, with different end groups in a range of MW values of (8 – 35)x10^3 g∙mol-1. Cytotoxicity relative to eukaryotic cells (epithelioid lines A-549 and MA-104) and bactericidal activity of the polymers were investigated. The effect of end groups and MW on toxicity and bactericidal activity has been shown. Dependence of the activity and, most of all, cytotoxicity on MW is preserved even at a small difference in MW values (10^4 gxmol-1) in the MW range of (18-35)x10^3 gxmol-1. A clear dependence of the studied properties on the nature of the terminal group has been revealed. Sulfate -O-S(=O)2-O¯ end group has a noticeable effect on the bactericidal efficiency and smaller influence on toxicity, while dithiocarbonyl end group -S-C(=S)-O-CH2-CH3 has significant effect on efficiency and especially toxicity, drastically increasing the second. In a whole, based on results obtained and considering toxicity values obtained for the MA-104 cell line, polymers PDAA of small MW seem to be promising as antimicrobial agents for the creation of new transdermal drugs.

13 March 2026 in Preprints.org
Verified
Preprint
Open access
PDF file
MSMargarita Shleeva
Margarita Shleeva
NKNataliya Kozobkova
Nataliya Kozobkova
GDGalina Demina
Galina Demina
AKArseny Kaprelyants
Arseny Kaprelyants
Background/Objectives: The escalating crisis of antibiotic resistance and the inherent limitations of conventional antibiotics necessitate the development of innovative therapeutic strategies. Targeted drug delivery (TDD) offers a powerful approach to enhance efficacy, minimize systemic toxicity, and circumvent bacterial resistance. This systematic review aims to evaluate the potential of unique bacterial transport systems (BTSs) and surface specific receptors as platforms for TDD via the "Trojan Horse" strategy (THS). Methods: A comprehensive literature review was conducted, focusing on studies that investigated the specificity and mechanisms of BTSs responsible for the uptake of essential metabolites. This includes an analysis of transport systems for siderophores, bacteria-specific sugars, cell wall components, D-amino acids, and vitamins. We assessed preclinical and clinical examples of drug conjugates utilizing these pathways, as well as emerging platforms such as bacteriophage-derived proteins, antibody-antibiotic conjugates, and bacterial extracellular vesicles (EVs). Results: BTSs demonstrate high specificity for their cognate substrates, providing effective molecular gateways for drug conjugate import. The siderophore-cephalosporin conjugate cefiderocol represents a clinically validated example, having received FDA approval. Preclinical studies further reveal that conjugates utilizing sugars (e.g., maltose, trehalose) and vitamins (e.g., B12) can significantly enhance antibiotic uptake and activity against both Gram-positive and Gram-negative pathogens, including drug-resistant strains. Emerging platforms like bacteriophage endolysins and engineered EVs show promise for overcoming biological barriers such as bacterial outer membranes and intracellular host niches. Conclusions: The THS leveraging BTSs represents a clinically viable and promising avenue for next-generation antibacterial therapies. While significant progress has been made, including regulatory approval of cefiderocol, further research is critically needed to identify novel BTSs, optimize drug-linker chemistry, improve the pharmacokinetics and biosafety of conjugates, and translate these innovative platforms into effective treatments for drug-resistant infections.