Jonathan Lilly

Jonathan Lilly

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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 April 2017 in Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences
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JLJonathan Lilly
Jonathan Lilly
A method is derived for the quantitative analysis of signals that are composed of superpositions of isolated, time-localized ‘events’. Here, these events are taken to be well represented as rescaled and phase-rotated versions of generalized Morse wavelets, a broad family of continuous analytic functions. Analysing a signal composed of replicates of such a function using another Morse wavelet allows one to directly estimate the properties of events from the values of the wavelet transform at its own maxima. The distribution of events in general power-law noise is determined in order to establish significance based on an expected false detection rate. Finally, an expression for an event’s ‘region of influence’ within the wavelet transform permits the formation of a criterion for rejecting spurious maxima due to numerical artefacts or other unsuitable events. Signals can then be reconstructed based on a small number of isolated points on the time/scale plane. This method, termed element analysis , is applied to the identification of long-lived eddy structures in ocean currents as observed by along-track measurements of sea surface elevation from satellite altimetry.

21 August 2017 in Nonlinear Processes in Geophysics
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JLJonathan Lilly
Jonathan Lilly
ASAdam Sykulski
Adam Sykulski
JEJeffrey Early
Jeffrey Early
SOSofia C. Olhede
Sofia C. Olhede
Stochastic processes exhibiting power-law slopes in the frequency domain are frequently well modeled by fractional Brownian motion (fBm), with the spectral slope at high frequencies being associated with the degree of small-scale roughness or fractal dimension. However, a broad class of real-world signals have a high-frequency slope, like fBm, but a plateau in the vicinity of zero frequency. This low-frequency plateau, it is shown, implies that the temporal integral of the process exhibits diffusive behavior, dispersing from its initial location at a constant rate. Such processes are not well modeled by fBm, which has a singularity at zero frequency corresponding to an unbounded rate of dispersion. A more appropriate stochastic model is a much lesser-known random process called the Matérn process, which is shown herein to be a damped version of fractional Brownian motion. This article first provides a thorough introduction to fractional Brownian motion, then examines the details of the Matérn process and its relationship to fBm. An algorithm for the simulation of the Matérn process in O(NlogN) operations is given. Unlike fBm, the Matérn process is found to provide an excellent match to modeling velocities from particle trajectories in an application to two-dimensional fluid turbulence.

7 December 2011 in Geophysical Research Letters
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JLJonathan Lilly
Jonathan Lilly
RSR. K. Scott
R. K. Scott
SOS. C. Olhede
S. C. Olhede

25 February 2021 in Earth System Science Data
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JLJonathan Lilly
Jonathan Lilly
PPPaula Pérez-Brunius
Paula Pérez-Brunius
A large set of historical surface drifter data from the Gulf of Mexico – 3770 trajectories spanning 28 years and more than a dozen data sources – are collected, uniformly processed and quality controlled, and assimilated into a spatially and temporally gridded dataset called GulfFlow. This dataset is available in two versions, with 1/4 ∘ or 1/12 ∘ spatial resolution respectively, both of which have overlapping monthly temporal bins with semimonthly spacing and which extend from the years 1992 through 2020. Together these form a significant resource for studying the circulation and variability in this important region. The uniformly processed historical drifter data from all publicly available sources, interpolated to hourly resolution, are also distributed in a separate product called GulfDriftersOpen. Forming a mean surface current map by directly bin-averaging the hourly drifter data is found to lead to severe artifacts, a consequence of the extremely inhomogeneous temporal distribution of the drifters. Averaging instead the already monthly-averaged data in GulfFlow avoids these problems, resulting in the highest-resolution map of the mean Gulf of Mexico surface currents yet produced. The consolidated drifter dataset is freely available at https://doi.org/10.5281/zenodo.3985916 (Lilly and Pérez-Brunius, 2021 a), while the gridded products are available for noncommercial use only (for reasons discussed herein) at https://doi.org/10.5281/zenodo.3978793 (Lilly and Pérez-Brunius, 2021 b).

16 February 2021 in Fluids
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JLJonathan Lilly
Jonathan Lilly
SEShane Elipot
Shane Elipot
The unsteady Ekman problem involves finding the response of the near-surface currents to wind stress forcing under linear dynamics. Its solution can be conveniently framed in the frequency domain in terms of a quantity that is known as the transfer function, the Fourier transform of the impulse response function. In this paper, a theoretical investigation of a fairly general transfer function form is undertaken with the goal of paving the way for future observational studies. Building on earlier work, we consider in detail the transfer function arising from a linearly-varying profile of the vertical eddy viscosity, subject to a no-slip lower boundary condition at a finite depth. The horizontal momentum equations, rendered linear by the assumption of horizontally uniform motion, are shown to transform to a modified Bessel’s equation for the transfer function. Two self-similarities, or rescalings that each effectively eliminate one independent variable, are identified, enabling the dependence of the transfer function on its parameters to be more readily assessed. A systematic investigation of asymptotic behaviors of the transfer function is then undertaken, yielding expressions appropriate for eighteen different regimes, and unifying the results from numerous earlier studies. A solution to a numerical overflow problem that arises in the computation of the transfer function is also found. All numerical code associated with this paper is distributed freely for use by the community.

20 April 2021 in Nonlinear Processes in Geophysics
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JLJonathan Lilly
Jonathan Lilly
PPPaula Pérez-Brunius
Paula Pérez-Brunius
A method for objectively extracting the displacement signals associated with coherent eddies from Lagrangian trajectories is presented, refined, and applied to a large dataset of 3770 surface drifters from the Gulf of Mexico. The method, wavelet ridge analysis, is a general method for the analysis of modulated oscillations, here modified to be more suitable to the eddy-detection problem. A means for formally assessing statistical significance is introduced, addressing the issue of false positives arising by chance from an unstructured turbulent background and opening the door to confident application of the method to very large datasets. Significance is measured through a frequency-dependent comparison with a stochastic dataset having statistical and spectral properties that match the original, but lacking organized oscillations due to eddies or waves. The application to the Gulf of Mexico reveals major asymmetries between cyclones and anticyclones, with anticyclones dominating at radii larger than about 50 km, but an unexpectedly rich population of highly nonlinear cyclones dominating at smaller radii. Both the method and the Gulf of Mexico eddy dataset are made freely available to the community for noncommercial use in future research.