Hyperspectral remote sensing provides a wealth of data essential for vegetation studies encompassing a wide range of applications (e.g., species diversity, ecosystem monitoring, etc.). The development and implementation of UAV-based hyperspectral systems have gained popularity over the last few years with novel efforts to demonstrate their operability. Here we describe the design, implementation, testing, and early results of the UAV-μCASI system, which showcases a relatively new hyperspectral sensor suitable for ecological studies. The μCASI (288 spectral bands) was integrated with a custom IMU-GNSS data recorder built in-house and mounted on a commercially available hexacopter platform with a gimbal to maximize system stability and minimize image distortion. We deployed the UAV-μCASI at three sites with different ecological characteristics across Canada: The Mer Bleue peatland, an abandoned agricultural field on Ile Grosbois, and the Cowichan Garry Oak Preserve meadow. We examined the attitude data from the flight controller to better understand airframe motion and the effectiveness of the integrated Differential Real Time Kinematic (RTK) GNSS. We describe important aspects of mission planning and show the effectiveness of a bundling adjustment to reduce boresight errors as well as the integration of a digital surface model for image geocorrection to account for parallax effects at the Mer Bleue test site. Finally, we assessed the quality of the radiometrically and atmospherically corrected imagery from the UAV-μCASI and found a close agreement (<2%) between the image derived reflectance and in-situ measurements. Overall, we found that a flight speed of 2.7 m/s, careful mission planning, and the integration of the bundling adjustment were important system characteristics for optimizing the image quality at an ultra-high spatial resolution (3–5 cm). Furthermore, environmental considerations such as wind speed (<5 m/s) and solar illumination also play a critical role in determining image quality. With the growing popularity of “turnkey” UAV-hyperspectral systems on the market, we demonstrate the basic requirements and technical challenges for these systems to be fully operational.

Peatlands play a fundamental role in climate regulation through their long-term accumulation of atmospheric carbon. Despite their resilience, peatlands are vulnerable to climate change. Remote sensing offers the opportunity to better understand these ecosystems at large spatial scales through time. In this study, we estimated water table depth from a 6-year time sequence of airborne shortwave infrared (SWIR) hyperspectral imagery. We found that the narrowband index NDWI₁₂₄₀ is a strong predictor of water table position. However, we illustrate the importance of considering peatland anisotropy on SWIR imagery from the summer months when the vascular plants are in full foliage, as not all illumination conditions are suitable for retrieving water table position. We also model net ecosystem exchange (NEE) from 10 years of Landsat TM5 imagery and from 4 years of Landsat OLI 8 imagery. Our results show the transferability of the model between imagery from sensors with similar spectral and radiometric properties such as Landsat 8 and Sentinel-2. NEE modeled from airborne hyperspectral imagery more closely correlated to eddy covariance tower measurements than did models based on satellite images. With fine spectral, spatial and radiometric resolutions, new generation satellite imagery and airborne hyperspectral imagery allow for monitoring the response of peatlands to both allogenic and autogenic factors.

Peatlands cover a large area in Canada and globally (12% and 3% of the landmass, respectively). These ecosystems play an important role in climate regulation through the sequestration of carbon dioxide from, and the release of methane to, the atmosphere. Monitoring approaches, required to understand the response of peatlands to climate change at large spatial scales, are challenged by their unique vegetation characteristics, intrinsic hydrological complexity, and rapid changes over short periods of time (e.g., seasonality). In this study, we demonstrate the use of multitemporal, high spatial resolution (1 m²) hyperspectral airborne imagery (Compact Airborne Spectrographic Imager (CASI) and Shortwave Airborne Spectrographic Imager (SASI) sensors) for assessing maximum instantaneous gross photosynthesis (PGmax) in hummocks, and gravimetric water content (GWC) and carbon uptake efficiency in hollows, at the Mer Bleue ombrotrophic bog. We applied empirical models (i.e., in situ data and spectral indices) and we derived spatial and temporal trends for the aforementioned variables. Our findings revealed the distribution of hummocks (51.2%), hollows (12.7%), and tree cover (33.6%), which is the first high spatial resolution map of this nature at Mer Bleue. For hummocks, we found growing season PGmax values between 8 μmol m⁻² s⁻¹ and 12 μmol m⁻² s⁻¹ were predominant (86.3% of the total area). For hollows, our results revealed, for the first time, the spatial heterogeneity and seasonal trends for gravimetric water content and carbon uptake efficiency for the whole bog.

In hyperspectral imaging (HSI), the spatial contribution to each pixel is non-uniform and extends past the traditionally square spatial boundaries designated by the pixel resolution, resulting in sensor-generated blurring effects. The spatial contribution to each pixel can be characterized by the net point spread function, which is overlooked in many airborne HSI applications. The objective of this study was to characterize and mitigate sensor blurring effects in airborne HSI data with simple tools, emphasizing the importance of point spread functions. Two algorithms were developed to (1) quantify spatial correlations and (2) use a theoretically derived point spread function to perform deconvolution. Both algorithms were used to characterize and mitigate sensor blurring effects on a simulated scene with known spectral and spatial variability. The first algorithm showed that sensor blurring modified the spatial correlation structure in the simulated scene, removing 54.0%–75.4% of the known spatial variability. Sensor blurring effects were also shown to remove 31.1%–38.9% of the known spectral variability. The second algorithm mitigated sensor-generated spatial correlations. After deconvolution, the spatial variability of the image was within 23.3% of the known value. Similarly, the deconvolved image was within 6.8% of the known spectral variability. When tested on real-world HSI data, the algorithms sharpened the imagery while characterizing the spatial correlation structure of the dataset, showing the implications of sensor blurring. This study substantiates the importance of point spread functions in the assessment and application of airborne HSI data, providing simple tools that are approachable for all end-users.

Optical satellite data products (e.g., Sentinel-2, PlanetScope, Landsat) require proper validation across diverse ecosystems. This has conventionally been achieved using airborne and more recently unmanned aerial vehicle (UAV) based hyperspectral sensors which constrain operations by both their cost and complexity of use. The MicaSense Altum is an accessible multispectral sensor that integrates a radiometric thermal camera with 5 bands (475 nm–840 nm). In this work we assess the spectral reflectance accuracy of a UAV-mounted MicaSense Altum at 25, 50, 75, and 100 m AGL flight altitudes using the manufacturer provided panel-based reflectance conversion technique for atmospheric correction at the Mer Bleue peatland supersite near Ottawa, Canada. Altum derived spectral reflectance was evaluated through comparison of measurements of six known nominal reflectance calibration panels to in situ spectroradiometer and hyperspectral UAV reflectance products. We found that the Altum sensor saturates in the 475 nm band viewing the 18% reflectance panel, and for all brighter panels for the 475, 560, and 668 nm bands. The Altum was assessed against pre-classified hummock-hollow-lawn microtopographic features using band level pair-wise comparisons and common vegetation indices to investigate the sensor’s viability as a validation tool of PlanetScope Dove 8 band and Sentinel-2A satellite products. We conclude that the use of the Altum needs careful consideration, and its field deployment and reflectance output does not meet the necessary cal/val requirements in the peatland site.

The correlation coefficient (CC) was substantiated as a simple, yet robust statistical tool in the quality assessment of hyperspectral imaging (HSI) data. The sensitivity of the metric was also characterized with respect to artificially-induced errors. The CC was found to be sensitive to spectral shifts and single feature modifications in hyperspectral ground data despite the high, artificially-induced, signal-to-noise ratio (SNR) of 100:1. The study evaluated eight airborne hyperspectral images that varied in acquisition spectrometer, acquisition date and processing methodology. For each image, we identified a uniform ground target region of interest (ROI) that was comprised of a single asphalt road pixel from each column within the sensor field-of-view (FOV). A CC was calculated between the spectra from each of the pixels in the ROI and the data from the center pixel. Potential errors were located by reductions in the CCs below a designated threshold, which was derived from the results of the sensitivity tests. The spectral range associated with each error was established using a windowing technique where the CCs were recalculated after removing the spectral data within various windows. Errors were isolated in the spectral window that removed the previously-identified reductions in the CCs. Finer errors were detected by calculating the CCs across the ROI in the spectral range surrounding various atmospheric absorption features. Despite only observing deviations in the CCs from the 3rd–6th decimal places, non-trivial errors were detected in the imagery. An error was detected within a single band of the shortwave infrared imagery. Errors were also observed throughout the visible-near-infrared imagery, especially in the blue end. With this methodology, it was possible to immediately gauge the spectral consistency of the HSI data across the FOV. Consequently, the effectiveness of various processing methodologies and the spectral consistency of the imaging spectrometers themselves could be studied. Overall, the research highlights the utility of the CC as a simple, low monetary cost, analytical tool for the localization of errors in spectroscopic imaging data.