Hyperspectral remote sensing provides a wealth of data essential for vegetation studies encompassing a wide range of applications (e.g., species diversity, ecosystem monitoring, etc.). The development and implementation of UAV-based hyperspectral systems have gained popularity over the last few years with novel efforts to demonstrate their operability. Here we describe the design, implementation, testing, and early results of the UAV-μCASI system, which showcases a relatively new hyperspectral sensor suitable for ecological studies. The μCASI (288 spectral bands) was integrated with a custom IMU-GNSS data recorder built in-house and mounted on a commercially available hexacopter platform with a gimbal to maximize system stability and minimize image distortion. We deployed the UAV-μCASI at three sites with different ecological characteristics across Canada: The Mer Bleue peatland, an abandoned agricultural field on Ile Grosbois, and the Cowichan Garry Oak Preserve meadow. We examined the attitude data from the flight controller to better understand airframe motion and the effectiveness of the integrated Differential Real Time Kinematic (RTK) GNSS. We describe important aspects of mission planning and show the effectiveness of a bundling adjustment to reduce boresight errors as well as the integration of a digital surface model for image geocorrection to account for parallax effects at the Mer Bleue test site. Finally, we assessed the quality of the radiometrically and atmospherically corrected imagery from the UAV-μCASI and found a close agreement (<2%) between the image derived reflectance and in-situ measurements. Overall, we found that a flight speed of 2.7 m/s, careful mission planning, and the integration of the bundling adjustment were important system characteristics for optimizing the image quality at an ultra-high spatial resolution (3–5 cm). Furthermore, environmental considerations such as wind speed (<5 m/s) and solar illumination also play a critical role in determining image quality. With the growing popularity of “turnkey” UAV-hyperspectral systems on the market, we demonstrate the basic requirements and technical challenges for these systems to be fully operational.

Peatlands play a fundamental role in climate regulation through their long-term accumulation of atmospheric carbon. Despite their resilience, peatlands are vulnerable to climate change. Remote sensing offers the opportunity to better understand these ecosystems at large spatial scales through time. In this study, we estimated water table depth from a 6-year time sequence of airborne shortwave infrared (SWIR) hyperspectral imagery. We found that the narrowband index NDWI₁₂₄₀ is a strong predictor of water table position. However, we illustrate the importance of considering peatland anisotropy on SWIR imagery from the summer months when the vascular plants are in full foliage, as not all illumination conditions are suitable for retrieving water table position. We also model net ecosystem exchange (NEE) from 10 years of Landsat TM5 imagery and from 4 years of Landsat OLI 8 imagery. Our results show the transferability of the model between imagery from sensors with similar spectral and radiometric properties such as Landsat 8 and Sentinel-2. NEE modeled from airborne hyperspectral imagery more closely correlated to eddy covariance tower measurements than did models based on satellite images. With fine spectral, spatial and radiometric resolutions, new generation satellite imagery and airborne hyperspectral imagery allow for monitoring the response of peatlands to both allogenic and autogenic factors.