Purpose: This prospective, longitudinal study aims to evaluate the durability and functionality of SARS-CoV-2 Ancestral strain (Wuhan-Hu-1)-specific immune responses induced by COVID-19 vaccination and natural infection over a 12-month period. This article reviews the study protocol, design, methodology, ongoing data collection, analysis procedures, and demographic characteristics of the cohort enrolled. Participants: Between March 2021 and May 2022, 400 participants were enrolled with a 12-month follow-up, concluding in May 2023. Two main groups of participants: (1) serologically SARS-CoV-2-naïve individuals receiving the BNT162b2 primary series vaccination (referred to as VAC) and (2) those who recently recovered from COVID-19 infection within 30 days, regardless of vaccination history (referred to as COV). Additionally, a subset of 45 participants with selected COVID-19 exposure histories provided peripheral blood mononuclear cells (PBMCs) for cross-sectional analysis six months after enrollment. Findings to date: Out of 400 participants, 66.8% (n=267) completed the follow-up. Among them, 52.8% (n=141) were in VAC, and 47.2% (n=126) were in COV. As the study progressed, we acknowledged cross-over between initial groups, leading to restructuring into five revised groups based on sequential exposure events. Sociodemographic factors revealed statistically significant age distribution differences (p=0.001) in both initial and revised groups, with no significant differences observed for sex. Future plans: LONGTONG-SARS2 assesses the host-pathogen interactions central to the development of COVID-19 immunity. With enrollment spanning two years of the pandemic, most participants exhibited mixed SARS-CoV-2 exposures—via vaccination and infection—resulting in diverse subgroups of interest. Notably, the inclusion of SARS-CoV-2-naïve, pre-exposure serum samples allowed for robust comparator and reduced potential biases. Ongoing analyses will include serology kinetics, memory cells ELISpots, B cells repertoire analysis, cytokine/chemokine profiling, and proteomic pathway to comprehensively examine the immune response against the SARS-CoV-2, thus informing and potentially predicting dynamic longitudinal responses against new more transmissible, immune-evasive SARS-CoV-2 variants. STRENGTH AND LIMITATIONS OF THIS STUDY: - LONGTONG-SARS2 is a prospective longitudinal study that comprehensively evaluates the SARS-CoV-2 immune response among a diverse group of individuals, stratified based on the sequential order of SARS-CoV-2 exposure events, whether from COVID-19 vaccination or infection. - Pre-vaccination serum samples were collected from serologically SARS-CoV-2 naive individuals scheduled to receive the BNT162b2 primary series vaccination during the initial mass COVID-19 vaccination phase in Malaysia in early 2021. - The longitudinal serum sample collection spanned two years of the COVID-19 pandemic, from March 2021 to May 2023. This extended duration allows for robust monitoring of the immune response against SARS-CoV-2 variants in comparison to the ancestral strain. - There is a risk of misclassification of some individuals’ SARS-CoV-2 exposure status through serology, as certain sampling timepoints had intervals of three months. Additionally, our study relies on self-reported data through the MySejahtera application (Malaysia’s electronic medical record by the Ministry of Health) for second confirmation, potentially leading to underdiagnosed and underreported cases of asymptomatic infection.