Muhamad Afiq Aziz

Dr. Muhamad Afiq Aziz

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 April 2024 in Environmental Pollution
Verified
Journal Article
Open access
HLHsin-Tien Lin
Hsin-Tien Lin
FSFalk Schneider
Falk Schneider
MAMuhamad Afiq Aziz
Muhamad Afiq Aziz
KENG YINN WONGKENG YINN WONG
KENG YINN WONG
KAKantha D. Arunachalam
Kantha D. Arunachalam
AKAlexander Kunz
Alexander Kunz
Microplastics pose a significant environmental threat, with potential implications for toxic chemical release, aquatic life endangerment, and human food chain contamination. In Asia, rapid economic growth coupled with inadequate waste management has escalated plastic pollution in rivers, positioning them as focal points for environmental concern. Despite Asia's rivers being considered the most polluted with plastics globally, scholarly attention to microplastics in the region's freshwater environments is a recent development. This study undertakes a systematic review of 228 scholarly articles to map microplastic hotspots in Asian freshwater systems and synthesize current research trends within the continent. Findings reveal a concentration of research in China and Japan, primarily investigating riverine and surface waters through net-based sampling methods. Polyethylene (PE), polypropylene (PP), and polyethylene terephthalate (PET) emerge as the predominant microplastic types, frequently observed as fibers or fragments. However, the diversity of sampling methodologies and reporting metrics complicates data synthesis, underscoring the need for standardized analytical frameworks to facilitate comparative analysis. This paper delineates the distribution of microplastic hotspots and outlines the prevailing challenges and prospects in microplastic research within Asian freshwater contexts.

15 October 2019 in Journal of Virology
Verified
Journal Article
Open access
SRSuzannah J Rihn
Suzannah J Rihn
MAMuhamad Afiq Aziz
Muhamad Afiq Aziz
DSDouglas G Stewart
Douglas G Stewart
JHJoseph Hughes
Joseph Hughes
MTMatthew L Turnbull
Matthew L Turnbull
SWSam Wilson
Sam Wilson
Vesicular stomatitis Indiana virus (VSIV) is a veterinary pathogen that is also used as a backbone for many oncolytic and vaccine strategies. In natural and therapeutic settings, viral infections like VSIV are sensed by the host, and as a result the host cells make proteins that can protect them from viruses. In the case of VSIV, these antiviral proteins constrain viral replication and protect most healthy tissues from virus infection. In order to understand how VSIV causes disease and how healthy tissues are protected from VSIV-based therapies, it is crucial that we identify the proteins that inhibit VSIV. Here, we show that TRIM69 is an antiviral defense that can potently and specifically block VSIV infection.

1 April 2017 in Journal of Virology
Verified
Journal Article
Open access
PDF file
SRSuzannah J. Rihn
Suzannah J. Rihn
Toshana FosterToshana Foster
Toshana Foster
IBIdoia Busnadiego
Idoia Busnadiego
MAMuhamad Afiq Aziz
Muhamad Afiq Aziz
JHJoseph Hughes
Joseph Hughes
SWSam Wilson
Sam Wilson
Type I interferon (IFN) signaling engenders an antiviral state that likely plays an important role in constraining HIV-1 transmission and contributes to defining subsequent AIDS pathogenesis. Type II IFN (IFN-γ) also induces an antiviral state but is often primarily considered to be an immunomodulatory cytokine. We report that IFN-γ stimulation can induce an antiviral state that can be both distinct from that of type I interferon and can potently inhibit HIV-1 in primary CD4+T cells and a number of human cell lines. Strikingly, we find that transmitted/founder (TF) HIV-1 viruses can resist a late block that is induced by type II IFN, and the use of chimeric IFN-γ-sensitive/resistant viruses indicates that interferon resistance maps to theenvgene. Simultaneously,in vitroevolution also revealed that just a single amino acid substitution in the envelope can confer substantial resistance to IFN-mediated inhibition. Thus, theenvgene of transmitted HIV-1 confers resistance to a late block that is phenotypically distinct from blocks previously described to be resisted byenvand is therefore mediated by unknown IFN-γ-stimulated factor(s) in human CD4+T cells and cell lines. This important unidentified block could play a key role in constraining HIV-1 transmission.IMPORTANCEThe human immune system can hinder invading pathogens through interferon (IFN) signaling. One consequence of this signaling is that cells enter an antiviral state, increasing the levels of hundreds of defenses that can inhibit the replication and spread of viruses. The majority of HIV-1 infections result from a single virus particle (the transmitted/founder) that makes it past these defenses and colonizes the host. Thus, the founder virus is hypothesized to be a relatively interferon-resistant entity. Here, we show that certain HIV-1 envelope genes have the unanticipated ability to resist specific human defenses mediated by different types of interferons. Strikingly, the envelope gene from a founder HIV-1 virus is far better at evading these defenses than the corresponding gene from a common HIV-1 lab strain. Thus, these defenses could play a role in constraining the transmission of HIV-1 and may select for transmitted viruses that are resistant to this IFN-mediated inhibition.

27 June 2023 in mBio
Verified
Journal Article
Open access
AHAlexandra Hardy
Alexandra Hardy
SBSiddharth Bakshi
Siddharth Bakshi
WFWilhelm Furnon
Wilhelm Furnon
OMOscar MacLean
Oscar MacLean
QGQuan Gu
Quan Gu
MPMassimo Palmarini
Massimo Palmarini
The host immune response usually aims to inhibit virus replication in order to avoid cell damage and disease. In some cases, however, the infected host avoids the deleterious effects of infection despite high levels of viral replication.

14 February 2022 in Science of The Total Environment
Verified
Journal Article
Open access
SCSiew Woh Choo
Siew Woh Choo
JCJu Lian Chong
Ju Lian Chong
PGPhilippe Gaubert
Philippe Gaubert
AHAlice Catherine Hughes
Alice Catherine Hughes
SOStephen O’bRien
Stephen O’bRien
MAMuhamad Afiq Aziz
Muhamad Afiq Aziz

18 November 2022 in PLOS Pathogens
Verified
Journal Article
Open access
PDF file
ESElena Sugrue
Elena Sugrue
AWArthur Wickenhagen
Arthur Wickenhagen
NMNardus Mollentze
Nardus Mollentze
MAMuhamad Afiq Aziz
Muhamad Afiq Aziz
VSVattipally B. Sreenu
Vattipally B. Sreenu
SWSam Wilson
Sam Wilson
HIV-1 transmission via sexual exposure is an inefficient process. When transmission does occur, newly infected individuals are colonized by the descendants of either a single virion or a very small number of establishing virions. These transmitted founder (TF) viruses are more interferon (IFN)-resistant than chronic control (CC) viruses present 6 months after transmission. To identify the specific molecular defences that make CC viruses more susceptible to the IFN-induced ‘antiviral state’, we established a single pair of fluorescent TF and CC viruses and used arrayed interferon-stimulated gene (ISG) expression screening to identify candidate antiviral effectors. However, we observed a relatively uniform ISG resistance of transmitted HIV-1, and this directed us to investigate possible underlying mechanisms. Simple simulations, where we varied a single parameter, illustrated that reduced growth rate could possibly underly apparent interferon sensitivity. To examine this possibility, we closely monitored in vitro propagation of a model TF/CC pair (closely matched in replicative fitness) over a targeted range of IFN concentrations. Fitting standard four-parameter logistic growth models, in which experimental variables were regressed against growth rate and carrying capacity, to our in vitro growth curves, further highlighted that small differences in replicative growth rates could recapitulate our in vitro observations. We reasoned that if growth rate underlies apparent interferon resistance, transmitted HIV-1 would be similarly resistant to any growth rate inhibitor. Accordingly, we show that two transmitted founder HIV-1 viruses are relatively resistant to antiretroviral drugs, while their matched chronic control viruses were more sensitive. We propose that, when present, the apparent IFN resistance of transmitted HIV-1 could possibly be explained by enhanced replicative fitness, as opposed to specific resistance to individual IFN-induced defences. However, further work is required to establish how generalisable this mechanism of relative IFN resistance might be.