Rafay Ahmed

Dr. Rafay Ahmed


Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 December 2021 in The Analyst
Verified
Journal Article
Closed access
PDF file
MUMustafa UNAL
Mustafa UNAL
RARafay Ahmed
Rafay Ahmed
AMand Anita Mahadevan-Jansen
and Anita Mahadevan-Jansen
JNJeffry Nyman
Jeffry Nyman
Raman spectroscopy (RS) is used to analyze the physiochemical properties of bone because it is non-destructive and requires minimal sample preparation. With over two decades of research involving measurements of mineral-to-matrix ratio, type-B carbonate substitution, crystallinity, and other compositional characteristics of the bone matrix by RS, there are multiple methods to acquire Raman signals from bone, to process those signals, and to determine peak ratios including sub-peak ratios as well as the full-width at half maximum of the most prominent Raman peak, which is nu1 phosphate (ν1PO4). Selecting which methods to use is not always clear. Herein, we describe the components of RS instruments and how they influence the quality of Raman spectra acquired from bone because signal-to-noise of the acquisition and the accompanying background fluorescence dictate the pre-processing of the Raman spectra. We also describe common methods and challenges in preparing acquired spectra for the determination of matrix properties of bone. This article also serves to provide guidance for the analysis of bone by RS with examples of how methods for pre-processing the Raman signals and for determining properties of bone composition affect RS sensitivity to potential differences between experimental groups. Attention is also given to deconvolution methods that are used to ascertain sub-peak ratios of the amide I band as a way to assess characteristics of collagen type I. We provide suggestions and recommendations on the application of RS to bone with the goal of improving reproducibility across studies and solidify RS as a valuable technique in the field of bone research.


16 May 2016 in PLOS ONE
Verified
Journal Article
Open access
PDF file
UMUmair Manzoor
Umair Manzoor
SSSumera Siddique
Sumera Siddique
RARafay Ahmed
Rafay Ahmed
ZNZobia Noreen
Zobia Noreen
HBHabib Bokhari
Habib Bokhari
IAIftikhar Ahmad
Iftikhar Ahmad
Structural investigations, optical properties and antibacterial performance of the pure Zinc Oxide (ZnO) nanoparticles (NPs) synthesized by mechano-chemical method are presented. The morphology, dimensions and crystallinity of the ZnO NPs were controlled by tweaking the mechanical agitation of the mixture and subsequent thermal treatment. ZnO nanoparticles in small (< 20 nm) dimensions with spherical morphology and narrow size distribution were successfully obtained after treating the mechano-chemically prepared samples at 250°C. However, higher temperature treatments produced larger particles. TEM, XRD and UV-Vis spectroscopy results suggested crystalline and phase pure ZnO. The NPs demonstrated promising antibacterial activity against Gram negative foodborne and waterborne bacterial pathogens i.e. Enteropathogenic E. coli (EPEC), Campylobacter jejuni and Vibrio cholerae as well as Gram positive methicillin resistant Staphylococcus aureus (MRSA), thus potential for medical applications. Scanning electron microscopy and survival assay indicated that most probably ZnO nanoparticles cause changes in cellular morphology which eventually causes bacterial cell death.

24 January 2018 in Nanoscale
Verified
Journal Article
Closed access
PDF file
MFMuhammad Usman Farid
Muhammad Usman Farid
Sanghyun JeongSanghyun Jeong
Sanghyun Jeong
DSDong Han Seo
Dong Han Seo
RARafay Ahmed
Rafay Ahmed
CLCondon LAU
Condon LAU
KAKyoungjin An
Kyoungjin An
While the cytotoxicity of graphene oxide (GO) has been well established, its bactericidal mechanism, however, has yet to be elucidated to advance GO-based biomedical and environmental applications. In an attempt to better understand the bactericidal action of GO, herein we studied the interactions of GO with Gram-negative Escherichia coli and Gram-positive Staphylococcus aureus cells using physical techniques and chemical probes, respectively. In particular, a novel laser-induced breakdown spectroscopy (LIBS) based elemental fingerprint analysis revealed notable differences between viable and non-viable cells based on the difference in the concentration of trace inorganic elements in complex bacterial systems, which reflect cellular membrane integrity. Lower emission intensities from essential inorganic ions in the GO-treated cells offered explicit evidence on the efflux of intracellular molecules from the bacteria through damaged cell membranes. Furthermore, a detailed structural and morphological investigation of bacterial membrane integrity confirmed GO-induced membrane stress upon direct contact interactions with bacterial cells, resulting in the disruption of cellular membranes. Moreover, the generation of intracellular reactive oxygen species (ROS) in the presence of an added antioxidant underlined the role of GO-mediated oxidative stress in bacterial cell inactivation. Thus, by correlating the changes in the bacterial elemental compositions with the severe morphological alterations and the high ROS production witnessed herein, we propose that the bactericidal mechanism of GO is likely to be the synergy between membrane and oxidative stress towards both tested species. Our findings offer useful guidelines for the future development of GO-based antibacterial surfaces and coatings.

1 November 2018 in Talanta
Verified
Journal Article
Closed access
SMSinai H.C. Manno
Sinai H.C. Manno
FMFrancis A.M. Manno
Francis A.M. Manno
IAIrfan Ahmed
Irfan Ahmed
RARafay Ahmed
Rafay Ahmed
LSLei Shu
Lei Shu
CLCondon LAU
Condon LAU

10 August 2023 in Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy
Verified
Journal Article
Closed access
RGRekha Gautam
Rekha Gautam
RARafay Ahmed
Rafay Ahmed
EHEzekiel Haugen
Ezekiel Haugen
MUMustafa Unal
Mustafa Unal
SFSean Fitzgerald
Sean Fitzgerald
JNJeffry Nyman
Jeffry Nyman