Hua Shi

Dr. Hua Shi

orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 March 2021 in Frontiers in Oncology
Verified
Journal Article
Open access
PDF file
WYWei Yan
Wei Yan
HSHua Shi
Hua Shi
THTao He
Tao He
JCJian Chen
Jian Chen
CWChen Wang
Chen Wang
HWHui-Han Wang
Hui-Han Wang
Objective: In order to enhance the detection rate of multiple myeloma and execute an early and more precise disease management, an artificial intelligence assistant diagnosis system is developed. Methods: 4,187 routine blood and biochemical examination records were collected from Shengjing Hospital affiliated to China Medical University from January 2010 to January 2020, which include 1,741 records of multiple myeloma (MM) and 2,446 records of non-myeloma (infectious diseases, rheumatic immune system diseases, hepatic diseases and renal diseases). The data set was split into training and test subsets with the ratio of 4:1 while connecting hemoglobin, serum creatinine, serum calcium, immunoglobulin (A, G and M), albumin, total protein, and the ratio of albumin to globulin data. An early assistant diagnostic model of MM was established by Gradient Boosting Decision Tree (GBDT), Support Vector Machine (SVM), Deep Neural Networks (DNN), and Random Forest (RF). Out team calculated the precision and recall of the system. The performance of the diagnostic model was evaluated by using the receiver operating characteristic (ROC) curve. Results: By designing the features properly, the typical machine learning algorithms SVM, DNN, RF and GBDT all performed well. GBDT had the highest precision (92.9%), recall (90.0%) and F1 score (0.915) for the myeloma group. The maximized area under the ROC (AUROC) was calculated, and the results of GBDT (AUC: 0.975; 95% confidence interval (CI): 0.963–0.986) outperformed that of SVM, DNN and RF. Conclusion: The model established by artificial intelligence derived from routine laboratory results can accurately diagnose MM, which can boost the rate of early diagnosis.

23 February 2022 in Analytical Biochemistry
Verified
Journal Article
Closed access
CMChaolu Meng
Chaolu Meng
YJYing Ju
Ying Ju
HSHua Shi
Hua Shi

17 November 2022 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
HSHua Shi
Hua Shi
YLYan Li
Yan Li
YCYi Chen
Yi Chen
YQYuming Qin
Yuming Qin
YTYifan Tang
Yifan Tang
YWYun Wu
Yun Wu

11 November 2021 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Closed access
QZQian Zhao
Qian Zhao
JMJiaqi Ma
Jiaqi Ma
YWYu Wang
Yu Wang
FXFang Xie
Fang Xie
ZLZhibin Lv
Zhibin Lv
KHKe Han
Ke Han
Protein s-nitrosylation (SNO) is one of the most important post-translational modifications and is formed by the covalent modification of nitric oxide and cysteine residues. Extensive studies have shown that SNO plays a pivotal role in the plant immune response and treating various major human diseases. In recent years, SNO sites have become a hot research topic. Traditional biochemical methods for SNO site identification are time-consuming and costly. In this study, we developed an economical and efficient SNO site prediction tool named Mul-SNO. Mul-SNO ensembled current popular and powerful deep learning model bidirectional long short-term memory (BiLSTM) and bidirectional encoder representations from Transformers (BERT). Compared with existing state-of-the-art methods, Mul-SNO obtained better ACC of 0.911 and 0.796 based on 10-fold cross-validation and independent data sets, respectively.

5 September 2022 in IEEE/ACM Transactions on Computational Biology and Bioinformatics
Verified
Journal Article
Closed access
CWChao Wang
Chao Wang
Quan ZouQuan Zou
Quan Zou
YJYing Ju
Ying Ju
HSHua Shi
Hua Shi
Enhancers are crucial for precise regulation of gene expression, while enhancer identification and strength prediction are challenging because of their free distribution and tremendous number of similar fractions in the genome. Although several bioinformatics tools have been developed, shortfalls in these models remain, and their performances need further improvement. In the present study, a two-layer predictor called Enhancer-FRL was proposed for identifying enhancers (enhancers or nonenhancers) and their activities (strong and weak). More specifically, to build an efficient model, the feature representation learning scheme was applied to generate a 50D probabilistic vector based on 10 feature encodings and five machine learning algorithms. Subsequently, the multiview probabilistic features were integrated to construct the final prediction model. Compared with the single feature-based model, Enhancer-FRL showed significant performance improvement and model robustness. Performance assessment on the independent test dataset indicated that the proposed model outperformed state-of-the-art available toolkits. The webserver Enhancer-FRL is freely accessible at http://lab.malab.cn/∼wangchao/softwares/Enhancer-FRL/ , The code and datasets can be downloaded at the webserver page or at the Github https://github.com/wangchao-malab/Enhancer-FRL/ .

2 January 2023 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
HSHua Shi
Hua Shi
CWChenjin Wu
Chenjin Wu
TBTao Bai
Tao Bai
JCJiahai Chen
Jiahai Chen
YLYan Li
Yan Li
HWHao Wu
Hao Wu