Nucleic acid separation is an increasingly important tool for molecular biology. Before modern technologies could be used, nucleic acid separation had been a time- and work-consuming process based on several extraction and centrifugation steps, often limited by small yields and low purities of the separation products, and not suited for automation and up-scaling. During the last few years, specifically functionalised magnetic particles were developed. Together with an appropriate buffer system, they allow for the quick and efficient purification directly after their extraction from crude cell extracts. Centrifugation steps were avoided. In addition, the new approach provided for an easy automation of the entire process and the isolation of nucleic acids from larger sample volumes. This review describes traditional methods and methods based on magnetic particles for nucleic acid purification. The synthesis of a variety of magnetic particles is presented in more detail. Various suppliers of magnetic particles for nucleic acid separation as well as suppliers offering particle-based kits for a variety of different sample materials are listed. Furthermore, commercially available manual magnetic separators and automated systems for magnetic particle handling and liquid handling are mentioned.
Iron oxide nanoparticles are of great scientific interest due to their huge versatility of applications. The oxidation process of magnetite to maghemite is difficult to monitor as both iron oxide polymorphs possess connatural chemical properties. Especially the surface composition and reactivity of these nanosystems, which are most relevant for interactions with their environment, are not completely understood. Here, the oxidation of magnetite is investigated under mild and harsh conditions in order to understand the oxidation behaviour and the chemical stability of transition forms. Therefore, the oxidation process, is investigated with Raman, Mössbauer and X-ray photoelectron spectroscopy as well as X-ray diffraction and magnetometry. The multi-analytical approach allows new insights into surface composition and rearrangement according to respective different depth profiles. For both conditions investigated, the ferrous iron components are oxidised prior to structural changes in the Fe–O vibrations and crystal structure. The process starts from the outer layers and is acid catalysed. Oxidation leads to a decrease of magnetisation which still remains higher than 54 emu g−1. The charge and surface reactivity can be affected by the different oxidation methods and the irreversible adsorption of acid molecules. Biocompatibility and catalytic properties of iron oxide nanoparticles open doors to future applications.
24 September 2015 in The Journal of Physical Chemistry C
Purified gastric mucins are currently used for a wide range of applications e.g. as a model system for native mucus, as lubricants or antiviral/antibacterial supplements. However, commercially available porcine gastric mucins (PGM) do not exhibit gel-forming properties and show only greatly reduced anti-viral/anti-bacterial activity. Thus, we established a robust purification process for PGM, maintaining its desired properties such as lubricity, gel formation and the selective binding of molecules. We optimized the process in terms of yield and productivity and evaluated the influence of different buffer conditions on mucin quality. Cross-flow filtration using 100 kDa membranes was introduced and optimized to pre-concentrate the mucin solution prior to size exclusion chromatography. A conductivity of less than 100 μS cm−1 after diafiltration was found to be crucial for gel formation. The mucin yield of the optimized process was 66%. The scale-up resulted in a productivity of 0.15 mg purified mucin per mL crude mucus an hour. In total, approx. 65 mg mucin could be purified from one pig stomach. Tribological studies, rheological measurements and co-localization experiments confirmed the retained functionality of purified mucin in terms of lubricity, gel formation and binding interactions with charged molecules, respectively.