Mark Hoogendoorn

Mark Hoogendoorn


Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 June 2012 in Autonomous Agents and Multi-Agent Systems
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TBTibor Bosse
Tibor Bosse
MHMark Hoogendoorn
Mark Hoogendoorn
MKMichel Klein
Michel Klein
JTJan Treur
Jan Treur
CWC. Natalie van der Wal
C. Natalie van der Wal
AWArlette van Wissen
Arlette van Wissen
Collective decision making involves on the one hand individual mental states such as beliefs, emotions and intentions, and on the other hand interaction with others with possibly different mental states. Achieving a satisfactory common group decision on which all agree requires that such mental states are adapted to each other by social interaction. Recent developments in social neuroscience have revealed neural mechanisms by which such mutual adaptation can be realised. These mechanisms not only enable intentions to converge to an emerging common decision, but at the same time enable to achieve shared underlying individual beliefs and emotions. This paper presents a computational model for such processes. As an application of the model, an agent-based analysis was made of patterns in crowd behaviour, in particular to simulate a real-life incident that took place on May 4, 2010 in Amsterdam. From available video material and witness reports, useful empirical data were extracted. Similar patterns were achieved in simulations, whereby some of the parameters of the model were tuned to the case addressed, and most parameters were assigned default values. The results show the inclusion of contagion of belief, emotion, and intention states of agents results in better reproduction of the incident than non-inclusion.

10 April 2020 in Data Science
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Journal Article
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FHFloris Den Hengst
Floris Den Hengst
EGEoin Martino Grua
Eoin Martino Grua
AHAli el Hassouni
Ali el Hassouni
MHMark Hoogendoorn
Mark Hoogendoorn
The major application areas of reinforcement learning (RL) have traditionally been game playing and continuous control. In recent years, however, RL has been increasingly applied in systems that interact with humans. RL can personalize digital systems to make them more relevant to individual users. Challenges in personalization settings may be different from challenges found in traditional application areas of RL. An overview of work that uses RL for personalization, however, is lacking. In this work, we introduce a framework of personalization settings and use it in a systematic literature review. Besides setting, we review solutions and evaluation strategies. Results show that RL has been increasingly applied to personalization problems and realistic evaluations have become more prevalent. RL has become sufficiently robust to apply in contexts that involve humans and the field as a whole is growing. However, it seems not to be maturing: the ratios of studies that include a comparison or a realistic evaluation are not showing upward trends and the vast majority of algorithms are used only once. This review can be used to find related work across domains, provides insights into the state of the field and identifies opportunities for future work.

1 May 2016 in Artificial Intelligence in Medicine
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Journal Article
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MHMark Hoogendoorn
Mark Hoogendoorn
PSPeter Szolovits
Peter Szolovits
LMLeon M.G. Moons
Leon M.G. Moons
MNMattijs E. Numans
Mattijs E. Numans
Machine learning techniques can be used to extract predictive models for diseases from electronic medical records (EMRs). However, the nature of EMRs makes it difficult to apply off-the-shelf machine learning techniques while still exploiting the rich content of the EMRs. In this paper, we explore the usage of a range of natural language processing (NLP) techniques to extract valuable predictors from uncoded consultation notes and study whether they can help to improve predictive performance. We study a number of existing techniques for the extraction of predictors from the consultation notes, namely a bag of words based approach and topic modeling. In addition, we develop a dedicated technique to match the uncoded consultation notes with a medical ontology. We apply these techniques as an extension to an existing pipeline to extract predictors from EMRs. We evaluate them in the context of predictive modeling for colorectal cancer (CRC), a disease known to be difficult to diagnose before performing an endoscopy. Our results show that we are able to extract useful information from the consultation notes. The predictive performance of the ontology-based extraction method moves significantly beyond the benchmark of age and gender alone (area under the receiver operating characteristic curve (AUC) of 0.870 versus 0.831). We also observe more accurate predictive models by adding features derived from processing the consultation notes compared to solely using coded data (AUC of 0.896 versus 0.882) although the difference is not significant. The extracted features from the notes are shown be equally predictive (i.e. there is no significant difference in performance) compared to the coded data of the consultations. It is possible to extract useful predictors from uncoded consultation notes that improve predictive performance. Techniques linking text to concepts in medical ontologies to derive these predictors are shown to perform best for predicting CRC in our EMR dataset.

17 August 2016 in IEEE Journal of Biomedical and Health Informatics
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MHMark Hoogendoorn
Mark Hoogendoorn
TBThomas Berger
Thomas Berger
ASAva Schulz
Ava Schulz
TSTimo Stolz
Timo Stolz
PSPeter Szolovits
Peter Szolovits
Predicting therapeutic outcome in the mental health domain is of utmost importance to enable therapists to provide the most effective treatment to a patient. Using information from the writings of a patient can potentially be a valuable source of information, especially now that more and more treatments involve computer-based exercises or electronic conversations between patient and therapist. In this paper, we study predictive modeling using writings of patients under treatment for a social anxiety disorder. We extract a wealth of information from the text written by patients including their usage of words, the topics they talk about, the sentiment of the messages, and the style of writing. In addition, we study trends over time with respect to those measures. We then apply machine learning algorithms to generate the predictive models. Based on a dataset of 69 patients, we are able to show that we can predict therapy outcome with an area under the curve of 0.83 halfway through the therapy and with a precision of 0.78 when using the full data (i.e., the entire treatment period). Due to the limited number of participants, it is hard to generalize the results, but they do show great potential in this type of information.

19 February 2020 in Journal of Medical Internet Research
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Journal Article
Open access
BFBurkhardt Funk
Burkhardt Funk
SSShiri Sadeh-Sharvit
Shiri Sadeh-Sharvit
EFEllen Fitzsimmons-Craft
Ellen Fitzsimmons-Craft
MTMickey Todd Trockel
Mickey Todd Trockel
GMGrace E Monterubio
Grace E Monterubio
C. Barr TaylorC. Barr Taylor
C. Barr Taylor
Background: Digital health interventions (DHIs) are poised to reduce target symptoms in a scalable, affordable, and empirically supported way. DHIs that involve coaching or clinical support often collect text data from 2 sources: (1) open correspondence between users and the trained practitioners supporting them through a messaging system and (2) text data recorded during the intervention by users, such as diary entries. Natural language processing (NLP) offers methods for analyzing text, augmenting the understanding of intervention effects, and informing therapeutic decision making.Objective: This study aimed to present a technical framework that supports the automated analysis of both types of text data often present in DHIs. This framework generates text features and helps to build statistical models to predict target variables, including user engagement, symptom change, and therapeutic outcomes.Methods: We first discussed various NLP techniques and demonstrated how they are implemented in the presented framework. We then applied the framework in a case study of the Healthy Body Image Program, a Web-based intervention trial for eating disorders (EDs). A total of 372 participants who screened positive for an ED received a DHI aimed at reducing ED psychopathology (including binge eating and purging behaviors) and improving body image. These users generated 37,228 intervention text snippets and exchanged 4285 user-coach messages, which were analyzed using the proposed model.Results: We applied the framework to predict binge eating behavior, resulting in an area under the curve between 0.57 (when applied to new users) and 0.72 (when applied to new symptom reports of known users). In addition, initial evidence indicated that specific text features predicted the therapeutic outcome of reducing ED symptoms.Conclusions: The case study demonstrates the usefulness of a structured approach to text data analytics. NLP techniques improve the prediction of symptom changes in DHIs. We present a technical framework that can be easily applied in other clinical trials and clinical presentations and encourage other groups to apply the framework in similar contexts.

23 August 2021 in Critical Care
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LFLucas M. Fleuren
Lucas M. Fleuren
TDTariq A. Dam
Tariq A. Dam
MTMichele Tonutti
Michele Tonutti
DBDaan P. de Bruin
Daan P. de Bruin
RLRobbert C. A. Lalisang
Robbert C. A. Lalisang
PEPaul W. G. Elbers
Paul W. G. Elbers
Background: The Coronavirus disease 2019 (COVID-19) pandemic has underlined the urgent need for reliable, multicenter, and full-admission intensive care data to advance our understanding of the course of the disease and investigate potential treatment strategies. In this study, we present the Dutch Data Warehouse (DDW), the first multicenter electronic health record (EHR) database with full-admission data from critically ill COVID-19 patients. Methods: A nation-wide data sharing collaboration was launched at the beginning of the pandemic in March 2020. All hospitals in the Netherlands were asked to participate and share pseudonymized EHR data from adult critically ill COVID-19 patients. Data included patient demographics, clinical observations, administered medication, laboratory determinations, and data from vital sign monitors and life support devices. Data sharing agreements were signed with participating hospitals before any data transfers took place. Data were extracted from the local EHRs with prespecified queries and combined into a staging dataset through an extract–transform–load (ETL) pipeline. In the consecutive processing pipeline, data were mapped to a common concept vocabulary and enriched with derived concepts. Data validation was a continuous process throughout the project. All participating hospitals have access to the DDW. Within legal and ethical boundaries, data are available to clinicians and researchers. Results: Out of the 81 intensive care units in the Netherlands, 66 participated in the collaboration, 47 have signed the data sharing agreement, and 35 have shared their data. Data from 25 hospitals have passed through the ETL and processing pipeline. Currently, 3464 patients are included in the DDW, both from wave 1 and wave 2 in the Netherlands. More than 200 million clinical data points are available. Overall ICU mortality was 24.4%. Respiratory and hemodynamic parameters were most frequently measured throughout a patient's stay. For each patient, all administered medication and their daily fluid balance were available. Missing data are reported for each descriptive. Conclusions: In this study, we show that EHR data from critically ill COVID-19 patients may be lawfully collected and can be combined into a data warehouse. These initiatives are indispensable to advance medical data science in the field of intensive care medicine.