Patrick A G Degenaar

Prof. Patrick A G Degenaar

orcid

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 January 2010 in Journal of Neural Engineering
Verified
Journal Article
Closed access
NGNir Grossman
Nir Grossman
VPVincent Poher
Vincent Poher
MGMatthew S Grubb
Matthew S Grubb
GKGordon T Kennedy
Gordon T Kennedy
KNKonstantin Nikolic
Konstantin Nikolic
Patrick A G DegenaarPatrick A G Degenaar
Patrick A G Degenaar
Studying neuronal processes such as synaptic summation, dendritic physiology and neural network dynamics requires complex spatiotemporal control over neuronal activities. The recent development of neural photosensitization tools, such as channelrhodopsin-2 (ChR2), offers new opportunities for non-invasive, flexible and cell-specific neuronal stimulation. Previously, complex spatiotemporal control of photosensitized neurons has been limited by the lack of appropriate optical devices which can provide 2D stimulation with sufficient irradiance. Here we present a simple and powerful solution that is based on an array of high-power micro light-emitting diodes (micro-LEDs) that can generate arbitrary optical excitation patterns on a neuronal sample with micrometre and millisecond resolution. We first describe the design and fabrication of the system and characterize its capabilities. We then demonstrate its capacity to elicit precise electrophysiological responses in cultured and slice neurons expressing ChR2.

16 January 2009 in Photochemistry and Photobiology
Verified
Journal Article
Closed access
PDF file
Konstantin NikolicKonstantin Nikolic
Konstantin Nikolic
NGNir Grossman
Nir Grossman
MGMatthew S. Grubb
Matthew S. Grubb
JBJuan Burrone
Juan Burrone
CTChris Toumazou
Chris Toumazou
Patrick A G DegenaarPatrick A G Degenaar
Patrick A G Degenaar

4 April 2008 in Journal of Physics D: Applied Physics
Verified
Journal Article
Closed access
VPV Poher
V Poher
NGN Grossman
N Grossman
GKG T Kennedy
G T Kennedy
KNK Nikolic
K Nikolic
HZH X Zhang
H X Zhang
MNM A A Neil
M A A Neil

14 February 2011 in IEEE Transactions on Biomedical Engineering
Verified
Journal Article
Open access
NGNir Grossman
Nir Grossman
KNKonstantin Nikolic
Konstantin Nikolic
CTChristofer Toumazou
Christofer Toumazou
Patrick A G DegenaarPatrick A G Degenaar
Patrick A G Degenaar
Channelrhodopsin-2 (ChR2) has become a widely used tool for stimulating neurons with light. Nevertheless, the underlying dynamics of the ChR2-evoked spikes are still not yet fully understood. Here, we develop a model that describes the response of ChR2-expressing neurons to light stimuli and use the model to explore the light-to-spike process. We show that an optimal stimulation yield is achieved when the optical energies are delivered in short pulses. The model allows us to theoretically examine the effects of using various types of ChR2 mutants. We show that while increasing the lifetime and shuttering speed of ChR2 have limited effect, reducing the threshold irradiance by increased conductance will eliminate adaptation and allow constant dynamic range. The model and the conclusion presented in this study can help to interpret experimental results, design illumination protocols, and seek improvement strategies in the nascent optogenetic field.

20 May 2009 in Journal of Neural Engineering
Verified
Journal Article
Closed access
Patrick A G DegenaarPatrick A G Degenaar
Patrick A G Degenaar
NGNir Grossman
Nir Grossman
MMMuhammad Ali Memon
Muhammad Ali Memon
JBJuan Burrone
Juan Burrone
MDMartin Dawson
Martin Dawson
KNKonstantin Nikolic
Konstantin Nikolic
The recent discovery that neurons can be photostimulated via genetic incorporation of artificial opsins is creating a revolution in the field of neural stimulation. In this paper we show its potential in the field of retinal prosthesis. We show that we need typically 100 mW cm(-2) in instantaneous light intensity on the neuron in order to stimulate action potentials. We also show how this can be reduced down to safe levels in order to negate thermal and photochromic damage to the eye. We also describe a gallium nitride LED light source which is also able to generate patterns of the required intensity in order to transfer reliable images.

5 May 2008 in Advanced Materials
Verified
Journal Article
Closed access
PDF file
LCLichun Chen
Lichun Chen
Patrick A G DegenaarPatrick A G Degenaar
Patrick A G Degenaar
DBDonal Bradley
Donal Bradley