Данил Альмирович Шарипов

Mr. Данил Альмирович Шарипов


Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 November 2022 in Plants
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MBMargarita Bakaeva
Margarita Bakaeva
Sergey ChetverikovSergey Chetverikov
Sergey Chetverikov
MTMaxim Timergalin
Maxim Timergalin
AFArina Feoktistova
Arina Feoktistova
TRTimur Rameev
Timur Rameev
GHGaisar Hkudaygulov
Gaisar Hkudaygulov
The reaction of plants to simultaneous stress action and treatment with biological stimulants still remains poorly studied. Laboratory and field experiments have been conducted to study the growth and yield of bread wheat (Triticum aestivum L.) of the variety Ekada 113; stress markers and quantitative ratios of phytohormones in plants under insufficient soil moisture; the effects of spraying with herbicide containing 2,4-D and dicamba and growth-stimulating bacterium Pseudomonas protegens DA1.2; and combinations of these factors. Under water shortage conditions, spraying plants with Chistalan reduced their growth compared to non-sprayed plants, which was associated with inhibition of root growth and a decrease in the content of endogenous auxins in the plants. Under conditions of combined stress, the treatment of plants with the strain P. protegens DA1.2 increased the IAA/ABA ratio and prevented inhibition of root growth by auxin-like herbicide, ensuring water absorption by the roots as well as increased transpiration. As a result, the content of malondialdehyde oxidative stress marker was reduced. Bacterization improved the water balance of wheat plants under arid field conditions. The addition of bacterium P. protegens DA1.2 to the herbicide Chistalan increased relative water content in wheat leaves by 11% compared to plants treated with herbicide alone. Application of the bacterial strain P. protegens DA1.2 increased the amount of harvested grain from 2.0–2.2 t/ha to 3.2–3.6 t/ha. Thus, auxin-like herbicide Chistalan and auxin-producing bacterium P. protegens DA1.2 may affect the balance of phytohormones in different ways. This could be the potential reason for the improvement in wheat plants’ growth during dry periods when the bacterium P. protegens DA1.2 is included in mixtures for weed control.

8 December 2023 in Toxics
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Sergey ChetverikovSergey Chetverikov
Sergey Chetverikov
GHGaisar Hkudaigulov
Gaisar Hkudaigulov
ДШДанил Альмирович Шарипов
Данил Альмирович Шарипов
SSSergey Starikov
Sergey Starikov
DCDarya Chetverikova
Darya Chetverikova
The use of bacteria of the genus Pseudomonas—destructors of persistent pollutants for biotechnologies of environmental purification—is an interesting area of research. The aim of this work was to study the potential of Pseudomonas mosselii strain 5(3) isolated from pesticide-contaminated soil as a degrader of C7-C10 perfluorocarboxylic acids (PFCAs) and analyze its complete genome. The genome of the strain has been fully sequenced. It consists of a chromosome with a length of 5,676,241 b.p. and containing a total of 5134 genes, in particular, haloalkane dehalogenase gene (dhaA), haloacetate dehalogenase H-1 gene (dehH1), fluoride ion transporter gene (crcB) and alkanesulfonate monooxygenase gene (ssuE), responsible for the degradation of fluorinated compounds. The strain P. mosselii 5(3) for was cultivated for 7 days in a liquid medium with various C7-C10 PFCAs as the sole source of carbon and energy, and completely disposed of them. The results of LC-MS analysis showed that the transformation takes place due to perfluorohexanoic acid with the release of various levels of stoichiometry (depending on PFCA) of fluorine ion mineralization indicators determined by ion chromatography. Thus, Pseudomonas mosselii strain 5(3) demonstrates a genetically confirmed high potential for the decomposition of C7-C10 PFCA.

5 December 2022 in Baghdad Science Journal
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Sergey ChetverikovSergey Chetverikov
Sergey Chetverikov
ДШДанил Альмирович Шарипов
Данил Альмирович Шарипов
Organofluorines, as a pollutant, belongs to a group of substances which are very difficult to neutralize. They are part of many products of everyday use and for this reason they pollute the environment in large quantities. Perfluorinated carboxylic acids are entered into the list of the “Stockholm Convention on Persistent Organic Pollutants” in order to minimize the load on the environment by significantly reducing their use, up to their complete rejection. The DD4 strain was isolated from the soil by the enrichment method and identified using 16S rRNA method as Pseudomonas plecoglossicida. It is able to metabolize perfluorooctanoic acid (PFOA) as the only carbon source in Raymond nutrient medium with a concentration of 1000 mg/l with the release of 132 mg/l fluorine ions. In tests conducted on the biological decomposition of perfluorooctanoic acid, it was possible to quantify its residues using tandem LCMS-IT-TOF. The presented results characterize the Pseudomonas plecoglossicida DD4 strain actively utilized PFOA as the sole carbon source, which characterizes it as a candidate for the creation of biological products aimed at the utilization of organofluorine pollutants.

22 December 2024 in Toxics
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Sergey ChetverikovSergey Chetverikov
Sergey Chetverikov
GHGaisar Hkudaigulov
Gaisar Hkudaigulov
ДШДанил Альмирович Шарипов
Данил Альмирович Шарипов
SSSergey Starikov
Sergey Starikov
Bacteria of the genus Pseudomonas are the most studied microorganisms that biodegrade persistent perfluoroorganic pollutants, and the research of their application for the remediation of environmental sites using biotechnological approaches remains relevant. The aim of this study was to investigate the ability of a known destructor of perfluorooctane sulfonic acid from the genus Pseudomonas to accelerate and enhance the destruction of long-chain perfluorocarboxylic acids (PFCAs), specifically perfluorooctanoic acid and perfluorononanoic acid, in water and soil in association with the strain P. mosselii 5(3), which has previously confirmed genetic potential for the degrading of PFCAs. The complete genome (5.86 million base pairs) of the strain 2,4-D, probably belonging to a new species of Pseudomonas, was sequenced, assembled, and analyzed. The genomes of both strains contain genes involved in the defluorination of fluorinated compounds, including haloacetate dehalogenase H-1 (dehH1) and haloalkane dehalogenase (dhaA). The strain 2,4-D also has a multicomponent enzyme system consisting of a dioxygenase component, an electron carrier, and 2-halobenzoate 1,2-dioxygenase (CbdA) with a preference for fluorides. The strain 2,4-D was able to defluorinate PFCAs in an aqueous cultivation system within 7 days, using them as the sole source of carbon and energy and converting them to perfluorheptanoic acid. It assisted strain 5(3) to convert PFCAs to perfluoropentanoic acid, accelerating the process by 24 h. In a model experiment for the bioaugmentation of microorganisms in artificially contaminated soil, the degradation of PFCAs by the association of pseudomonads also occurred faster and deeper than by the individual strains, achieving a degree of biodestruction of 75% over 60 days, with the perfluoropentanoic acid as the main metabolite. These results are of great importance for the development of methods for the biological recultivation of fluorinated organic pollutants for environmental protection and for understanding the fundamental mechanisms of bacterial interactions with these compounds.

27 November 2024 in Preprints.org
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Sergey ChetverikovSergey Chetverikov
Sergey Chetverikov
GHGaisar Hkudaigulov
Gaisar Hkudaigulov
ДШДанил Альмирович Шарипов
Данил Альмирович Шарипов
SSSergey Starikov
Sergey Starikov
Bacteria of the genus Pseudomonas are the most studied microorganisms in the biodestruction of persistent perfluoroorganic pollutants, and the research on their application for the remediation of environmental sites using biotechnological methods remains relevant. The aim of this study was to investigate the ability of a known destructor of perfluorooctane sulfonic acid from the genus Pseudomonas to accelerate and enhance the depth of destruction of long-chain perfluorocarboxylic acids (PFCAs), specifically perfluorooctanoic acid and perfluorononanoic acid, in water and soil in association with the strain P. mosselii 5(3), which has previously confirmed genetic potential for degrading PFCAs. The complete genome (length 5.86 million base pairs) of the strain 2,4-D, a new species of Pseudomonas, was sequenced, assembled, and analyzed. The genomes of both strains contain genes involved in the defluorination of fluorinated compounds, including haloacetate dehalogenase H-1 (dehH1) and haloalkane dehalogenase (dhaA). The strain 2,4-D also has a multi-component enzyme system consisting of a dioxygenase component, an electron carrier, and 2-halobenzoate 1,2-dioxygenase (CbdA) with a preference for fluorides. The strain 2,4-D was able to completely decarboxylate and defluorinate PFCAs in an aqueous cultivation system within 7 days, using them as the sole source of carbon and energy, but it only converted them to perfluorheptanoic acid. However, it assisted strain 5(3) (which defluorinated them during the same period to perfluorohexanoic acid) in converting PFCAs to perfluoropentanoic acid, accelerating the process by 24 hours. The degradation and transformation of the anionic acids were assessed using LC-MS analysis, and the release of indicators for mineralization of fluoride ions was determined by ion chromatography. In a model experiment for bioaugmentation of microorganisms in artificially contaminated soil, the degradation of PFCAs by the association of pseudomonads also occurred faster and deeper than by the individual strains, achieving a degree of biodestruction of 75% over 60 days, with perfluoropentanoic acid being the main metabolite of destruction. Thus, it has been demonstrated that strains of Pseudomonas bacteria with genetic potential for the biodegradation of PFCAs are capable of realizing this potential in association, exhibiting an additive effect.

2 April 2026 in Proceedings of universities. Applied chemistry and biotechnology
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SSSergey Starikov
Sergey Starikov
ДШДанил Альмирович Шарипов
Данил Альмирович Шарипов
Sergey ChetverikovSergey Chetverikov
Sergey Chetverikov
Бактериальная ассоциация Bacillus sp. MX3 и Ensifer adhaerens M1 для эффективной деструкцииперфторалкильных соединений