Karina Trejo

Dr. Karina Trejo

orcid

Research Focus & Metrics

Academic Career Length

2Years (2025-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 January 2025 in Diagnostics
Verified
Journal Article
Open access
PDF file
CSCarlos Humberto Espino Salinas
Carlos Humberto Espino Salinas
Huizilopoztli Luna-GarcíaHuizilopoztli Luna-García
Huizilopoztli Luna-García
AAAlejandra Cepeda Arguelles
Alejandra Cepeda Arguelles
KTKarina Trejo
Karina Trejo
LFLuis Alberto Flores
Luis Alberto Flores
KVKlinge Orlando Villalba-Condori
Klinge Orlando Villalba-Condori
Background/Objectives: This study presents a Convolutional Neural Network (CNN) approach for detecting depression and schizophrenia using motor activity patterns represented as images. Participants’ motor activity data were captured and transformed into visual representations, enabling advanced computer vision techniques for the classification of these mental disorders. The model’s performance was evaluated using a three-fold cross-validation, achieving an average accuracy of 95%, demonstrating the effectiveness of the proposed approach in accurately identifying mental health conditions. The objective of the study is to develop a model capable of identifying different mental disorders by processing motor data using CNN in order to provide a support tool to areas specialized in the diagnosis and efficient treatment of these psychological conditions. Methods: The methodology involved segmenting and transforming motor activity data into images, followed by a CNN training and testing phase on these visual representations. This innovative approach enables the identification of subtle motor behavior patterns, potentially indicative of specific mental states, without invasive interventions or self-reporting. Results: The results suggest that CNNs can capture discriminative features in motor activity to differentiate between individuals with depression, schizophrenia, and those without mental health diagnoses. Conclusions: These findings underscore the potential of computer vision and deep neural network techniques to contribute to early, non-invasive mental health disorder diagnosis, with significant implications for developing mental health support tools.

23 December 2025 in Diagnostics
Verified
Journal Article
Open access
PDF file
MFMartin Hazael Guerrero Flores
Martin Hazael Guerrero Flores
VMValeria Maeda-Gutiérrez
Valeria Maeda-Gutiérrez
Carlos Eric Galván-TejadaCarlos Eric Galván-Tejada
Carlos Eric Galván-Tejada
Carlos Eric Galván-TejadaCarlos Eric Galván-Tejada
Carlos Eric Galván-Tejada
MCMiguel Cruz
Miguel Cruz
JSJavier Saldivar
Javier Saldivar
Background: Type 2 diabetes (T2D) is a growing public health problem in Mexico. Lipid profile alterations have been shown to appear years before changes in glycemic biomarkers, and some of the latter are limited in availability, especially in underserved settings. Therefore, anthropometric variables and lipids represent relevant early indicators for the early detection of the disease. This study evaluates the capacity of non-glycemic clinical data—including lipid profile and anthropometric indicators—to detect T2D using machine learning, and compares the performance of different feature engineering approaches. Methods: Using more than a thousand clinical records of Mexican adults, three experiments were developed: (1) a distribution and normality analysis to characterize the variability of lipid variables; (2) an evaluation of the predictive power of multiple atherogenic indices (Castelli I, Castelli II, TG/HDL, and AIP); and (3) the implementation of statistical transformations (logarithmic, quare-root, and Z-standardization) to stabilize variance and improve feature quality. Logistic regression, SVM-RBF, random forest, and XGBoost models were trained on each feature set and evaluated using accuracy, sensitivity, specificity, F1-score, and area under the ROC curve. Results: The AIP index showed the greatest discriminatory power among the atherogenic indices, while normality-based transformations improved the performance of distribution-sensitive models, such as SVM. In the final experiment, the SVM-RBF and XGBoost models achieved AUC values greater than 0.90, demonstrating the feasibility of a diagnostic approach based exclusively on non-glycemic data. Conclusions: The findings indicate that the transformed lipid profile and anthropometric variables can constitute a solid and accessible alternative for the early detection of T2D in clinical and public health contexts, offering a robust methodological framework for future predictive applications in the absence of traditional glycemic biomarkers.

27 March 2026 in Immuno
Verified
Journal Article
Open access
PDF file
KTKarina Trejo
Karina Trejo
CSCarlos Humberto Espino Salinas
Carlos Humberto Espino Salinas
Carlos Eric Galván-TejadaCarlos Eric Galván-Tejada
Carlos Eric Galván-Tejada
KVKaren E. Villagrana-Bañuelos
Karen E. Villagrana-Bañuelos
VMValeria Maeda-Gutiérrez
Valeria Maeda-Gutiérrez
MSManuel A. Soto-Murillo
Manuel A. Soto-Murillo
Melanoma is characterized by a high mutational burden making it an established model for studying tumor neoantigens and developing strategies for personalized immunotherapy. In this study, a reproducible bioinformatics pipeline was developed and implemented for the identification and prioritization of candidate neoantigens derived from non-synonymous somatic mutations in melanoma, using genomic data from the MSK-IMPACT cohort (mel-mskimpact-2020; n = 696) and comparative reference information from TCGA-SKCM. From the somatic mutation annotation file (MAF), 16,311 non-synonymous mutations were filtered, from which 50,480 mutant 8–11-mer peptides were generated using a sliding-window approach centered on the mutated position. Peptide–HLA class I binding affinity was predicted using MHCflurry 2.0 across six representative alleles (HLA-A*02:01, HLA-A*24:02, HLA-B*35:01, HLA-B*39:05, HLA-C*04:01, and HLA-C*07:02). Candidate prioritization was initially based on predicted binding percentile (rank ≤ 2), identifying 12,209 peptide–HLA combinations with high predicted binding affinity. To refine candidate selection, additional computational analyses were incorporated, including proteasomal cleavage prediction using NetChop 3.1 and estimation of T-cell epitope immunogenicity using the Immune Epitope Database (IEDB) immunogenicity predictor. Furthermore, a direct comparison between mutant (MUT) and corresponding wild-type (WT) peptides was performed using Δaffinity and Δrank metrics to evaluate the predicted impact of somatic mutations on HLA binding. The analysis revealed a predominance of peptides associated with the HLA-B locus, particularly the allele HLA-B*35:01, among the interactions with the lowest predicted binding percentiles. Several high-ranking peptide candidates were derived from genes with known roles in melanoma biology, including PLCG2, GATA3, AKT1, PTEN, PTCH1, and SMO. Overall, the integrative computational framework implemented in this study enables the systematic prioritization of candidate neoantigens derived from non-synonymous mutations in melanoma. This pipeline provides a reproducible strategy for exploring tumor neoantigen repertoires and may serve as a foundation for subsequent experimental validation and for studies related to neoantigen-based immunotherapies and immunopeptidomics.