Asim Debnath

Dr. Asim Debnath

Member, Laboratory of Molecular Modeling and Drug Design, Lindsley F. Kimball Research Institute, New York Blood Center, New York, NY 10065, United States
orcid

Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 May 2008 in Journal of Molecular Biology
Verified
Journal Article
Closed access
HZHongtao Zhang
Hongtao Zhang
QZQian Zhao
Qian Zhao
SBShibani Bhattacharya
Shibani Bhattacharya
AWAbdul A. Waheed
Abdul A. Waheed
XTXiaohe Tong
Xiaohe Tong
Asim DebnathAsim Debnath
Asim Debnath

1 August 1999 in Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
Asim DebnathAsim Debnath
Asim Debnath
LRLin Radigan
Lin Radigan
SJShibo Jiang
Shibo Jiang

11 September 2009 in Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
AKAlan R. Katritzky
Alan R. Katritzky
STSrinivasa R. Tala
Srinivasa R. Tala
HLHong Lu
Hong Lu
AVAnatoliy V. Vakulenko
Anatoliy V. Vakulenko
QCQi-Yin Chen
Qi-Yin Chen
Asim DebnathAsim Debnath
Asim Debnath

23 April 2012 in Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
FCFrancesca Curreli
Francesca Curreli
SCSpreeha Choudhury
Spreeha Choudhury
IPIlya Pyatkin
Ilya Pyatkin
VZVictor P. Zagorodnikov
Victor P. Zagorodnikov
ABAnna Khulianova Bulay
Anna Khulianova Bulay
Asim DebnathAsim Debnath
Asim Debnath

22 December 2020 in mBio
Verified
Journal Article
Open access
PDF file
FCFrancesca Curreli
Francesca Curreli
SVSofia M. B. Victor
Sofia M. B. Victor
SAShahad Ahmed
Shahad Ahmed
ADAleksandra K Drelich
Aleksandra K Drelich
XTXiaohe Tong
Xiaohe Tong
Asim DebnathAsim Debnath
Asim Debnath
SARS-CoV-2 uses human angiotensin-converting enzyme 2 (ACE2) as the primary receptor to enter host cells and initiate the infection. The critical binding region of ACE2 is an ∼30-amino-acid (aa)-long helix. Here, we report the design of four stapled peptides based on the ACE2 helix, which is expected to bind to SARS-CoV-2 and prevent the binding of the virus to the ACE2 receptor and disrupt the infection. All stapled peptides showed high helical contents (50 to 94% helicity). In contrast, the linear control peptide NYBSP-C showed no helicity (19%). We have evaluated the peptides in a pseudovirus-based single-cycle assay in HT1080/ACE2 cells and human lung cell line A549/ACE2, overexpressing ACE2. Three of the four stapled peptides showed potent antiviral activity in HT1080/ACE2 (50% inhibitory concentration [IC50]: 1.9 to 4.1 μM) and A549/ACE2 (IC50: 2.2 to 2.8 μM) cells. The linear peptide NYBSP-C and the double-stapled peptide StRIP16, used as controls, showed no antiviral activity. Most significantly, none of the stapled peptides show any cytotoxicity at the highest dose tested. We also evaluated the antiviral activity of the peptides by infecting Vero E6 cells with the replication-competent authentic SARS-CoV-2 (US_WA-1/2020). NYBSP-1 was the most efficient, preventing the complete formation of cytopathic effects (CPEs) at an IC100 of 17.2 μM. NYBSP-2 and NYBSP-4 also prevented the formation of the virus-induced CPE with an IC100 of about 33 μM. We determined the proteolytic stability of one of the most active stapled peptides, NYBSP-4, in human plasma, which showed a half-life (T1/2) of >289 min. IMPORTANCE SARS-CoV-2 is a novel virus with many unknowns. No vaccine or specific therapy is available yet to prevent and treat this deadly virus. Therefore, there is an urgent need to develop novel therapeutics. Structural studies revealed critical interactions between the binding site helix of the ACE2 receptor and SARS-CoV-2 receptor-binding domain (RBD). Therefore, targeting the entry pathway of SARS-CoV-2 is ideal for both prevention and treatment as it blocks the first step of the viral life cycle. We report the design of four double-stapled peptides, three of which showed potent antiviral activity in HT1080/ACE2 cells and human lung carcinoma cells, A549/ACE2. Most significantly, the active stapled peptides with antiviral activity against SARS-CoV-2 showed high α-helicity (60 to 94%). The most active stapled peptide, NYBSP-4, showed substantial resistance to degradation by proteolytic enzymes in human plasma. The lead stapled peptides are expected to pave the way for further optimization of a clinical candidate.

29 December 2010 in Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
Shibo JiangShibo Jiang
Shibo Jiang
STSrinivasa R. Tala
Srinivasa R. Tala
HLHong Lu
Hong Lu
NANader E. Abo-Dya
Nader E. Abo-Dya
IAIlker Avan
Ilker Avan
Asim DebnathAsim Debnath
Asim Debnath